Transparent, Reproducible, and Open Science Practices of Published Literature in Dermatology Journals: Cross-Sectional Analysis

Authors : J Michael Anderson, Andrew Niemann, Austin L Johnson, Courtney Cook, Daniel Tritz, Matt Vassar

Background

Reproducible research is a foundational component for scientific advancements, yet little is known regarding the extent of reproducible research within the dermatology literature.

Objective

This study aimed to determine the quality and transparency of the literature in dermatology journals by evaluating for the presence of 8 indicators of reproducible and transparent research practices.

Methods

By implementing a cross-sectional study design, we conducted an advanced search of publications in dermatology journals from the National Library of Medicine catalog. Our search included articles published between January 1, 2014, and December 31, 2018.

After generating a list of eligible dermatology publications, we then searched for full text PDF versions by using Open Access Button, Google Scholar, and PubMed. Publications were analyzed for 8 indicators of reproducibility and transparency—availability of materials, data, analysis scripts, protocol, preregistration, conflict of interest statement, funding statement, and open access—using a pilot-tested Google Form.

Results

After exclusion, 127 studies with empirical data were included in our analysis. Certain indicators were more poorly reported than others. We found that most publications (113, 88.9%) did not provide unmodified, raw data used to make computations, 124 (97.6%) failed to make the complete protocol available, and 126 (99.2%) did not include step-by-step analysis scripts.

Conclusions

Our sample of studies published in dermatology journals do not appear to include sufficient detail to be accurately and successfully reproduced in their entirety. Solutions to increase the quality, reproducibility, and transparency of dermatology research are warranted.

More robust reporting of key methodological details, open data sharing, and stricter standards journals impose on authors regarding disclosure of study materials might help to better the climate of reproducible research in dermatology.

URL : Transparent, Reproducible, and Open Science Practices of Published Literature in Dermatology Journals: Cross-Sectional Analysis

DOI : https://doi.org/10.2196/16078

Inferring the causal effect of journals on citations

Author : Vincent Traag

Articles in high-impact journals are by definition more highly cited on average. But are they cited more often because the articles are somehow “better”? Or are they cited more often simply because they appeared in a high-impact journal? Although some evidence suggests the latter the causal relationship is not clear.

We here compare citations of published journal articles to citations of their preprint versions to uncover the causal mechanism. We build on an earlier model to infer the causal effect of journals on citations. We find evidence for both effects.

We show that high-impact journals seem to select articles that tend to attract more citations. At the same time, we find that high-impact journals augment the citation rate of published articles.

Our results yield a deeper understanding of the role of journals in the research system. The use of journal metrics in research evaluation has been increasingly criticised in recent years and article-level citations are sometimes suggested as an alternative.

Our results show that removing impact factors from evaluation does not negate the influence of journals. This insight has important implications for changing practices of research evaluation.

URL : https://arxiv.org/abs/1912.08648

The Pricing of Open Access Journals: Diverse Niches and Sources of Value in Academic Publishing

Authors : Kyle Siler, Koen Frenken

Open Access (OA) publishing has created new academic and economic niches in contemporary science. OA journals offer numerous publication outlets with varying editorial philosophies and business models.

This article analyzes the Directory of Open Access Journals (DOAJ) (N=12,127) to identify characteristics of OA academic journals related to the adoption of Article Processing Charge (APC)-based business models, as well as price points of journals that charge APCs. Journal Impact Factor (JIF), language, publisher mission, DOAJ Seal, economic and geographic regions of publishers, peer review duration and journal discipline are all significantly related to the adoption and pricing of journal APCs.

Even after accounting for other journal characteristics (prestige, discipline, publisher country), journals published by for-profit publishers charge the highest APCs. Journals with status endowments (JIF, DOAJ Seal), articles written in English, published in wealthier regions, and in medical or science-based disciplines are also relatively costlier.

The OA publishing market reveals insights into forces that create economic and academic value in contemporary science. Political and institutional inequalities manifest in the varying niches occupied by different OA journals and publishers.

URL : The Pricing of Open Access Journals: Diverse Niches and Sources of Value in Academic Publishing

DOI : https://doi.org/10.1162/qss_a_00016

Adoption of the open access business model in scientific journal publishing – A cross-disciplinary study

Authors : Bo-Christer Björk, Timo Korkeamäki

Scientific journal publishers have over the past twenty-five years rapidly converted to predominantly electronic dissemination, but the reader-pays business model continues to dominate the market.

Open Access (OA) publishing, where the articles are freely readable on the net, has slowly increased its market share to near 20%, but has failed to fulfill the visions of rapid proliferation predicted by many early proponents.

The growth of OA has also been very uneven across fields of science. We report market shares of open access in eighteen Scopus-indexed disciplines ranging from 27% (agriculture) to 7% (business).

The differences become far more pronounced for journals published in the four countries, which dominate commercial scholarly publishing (US, UK, Germany and the Netherlands). We present contrasting developments within six academic disciplines.

Availability of funding to pay publication charges, pressure from research funding agencies, and the diversity of discipline-specific research communication cultures arise as potential explanations for the observed differences.

URL : https://haris.hanken.fi/portal/files/11186226/Bjo_rk_Korkeama_ki_2020_a_Green_version.pdf

An Analysis of Digital Library Publishing Services in Ukrainian Universities

Authors : Tetiana Kolesnykova, Olena Matveyeva

Objective – The objective of this study was to assess the current state of digital library publishing (DLP) in university libraries in the Ukraine. The study was conducted in the hopes of gaining a better understanding of the DLP landscape, namely institutional operations, as well as their varying publishing initiatives, processes, and scope.

Methods

The current study was conducted from January to June 2017 using a mixed methods approach, involving semi-structured interviews and an online questionnaire. Semi-structured interviews were conducted (n = 11) to gain insight into participants’ experiences with DLP.

The interviews helped in the creation of the questions included in our online questionnaire. The questionnaire was distributed to 195 representatives (directors and leading specialists) of university libraries in the Ukraine. Replies were received from 111 of those institutions.

The questionnaire consisted of 11 open- and closed-ended questions to allow the researchers to obtain a holistic picture of the process under investigation.

Results

Analysis of the 111 questionnaires showed that for 26 libraries, DLP services were performed by employees of a separate structural unit of the library. For 34 libraries, employees of various departments were involved in performing certain types of services.

The other 40 respondents’ libraries were planning to do this in the near future. Only 11 respondents replied that they did provide DLP services now nor planned to in the future. Among the libraries providing DLP services, the following results were observed: 54 of 60 work with digital repositories, 47 provide digital publishing platforms for journals, 26 provide digital publishing platforms for books, and 23 provide digital publishing platforms for conferences.

Conclusions

The results obtained indicate a growing trend of expanding digital services in university libraries to support study, teaching, and research. Despite the still spontaneous, chaotic, and poorly explored nature of the development of the library publishing movement in the university libraries of the Ukraine, the readiness of librarians to implement publishing activities is notable.

At the same time, the survey results point to specific aspects, such as organizational, economic, personnel, and motivational, that require further study.

URL : An Analysis of Digital Library Publishing Services in Ukrainian Universities

DOI : https://doi.org/10.18438/eblip29510

Connecting Users to Articles: An Analysis of the Impact of Article Level Linking on Journal Use Statistics

Author : Michelle Swab

Objective

Electronic resource management challenges and “big deal” cancellations at one Canadian university library contributed to a situation where a number of electronic journal subscriptions at the university’s health sciences library lacked article level linking.

The aim of this study was to compare the usage of journals with article level linking enabled to journals where only journal level linking was available or enabled.

Methods

A list of electronic journal title subscriptions was generated from vendor and subscription agent invoices. Journal titles were eligible for inclusion if the subscription was available throughout 2018 on the publisher’s platform, if the subscription costs were fully funded by the health sciences library, and if management of the subscription required title-by-title intervention by library staff. Of the 356 journal titles considered, 302 were included in the study.

Negative binomial regression was performed to determine the effect of journal vs. article level linking on total COUNTER Journal Report 1 (JR1) successful full-text article requests for 2018, controlling for journal publisher, subject area, journal ranking, and alternate aggregator access.

Results

The negative binomial regression model demonstrated that article level linking had a significant, positive effect on total 2018 JR1 (coef: 0.645; p < 0.001). Article level linking increased the expected total JR1 by 90.7% when compared to journals where article level linking was not available or enabled.

Differences in predicted usage between journals with article level linking and those without article level linking remained significant at various journal ranking levels.

This suggests that usage of both smaller, more specialized journals (e.g., Journal of Vascular Research) and larger, general journals (e.g., New England Journal of Medicine) increases when article level linking is enabled.

Conclusions

This study provides statistical evidence that enabling article level linking has a positive impact on journal usage at one academic health sciences library. Although further study is needed, academic libraries should consider enabling article level linking wherever possible in order to facilitate user access, maximize the value of journal subscriptions, and improve convenience for users.

URL : Connecting Users to Articles: An Analysis of the Impact of Article Level Linking on Journal Use Statistics

DOI : https://doi.org/10.18438/eblip29613

Scholarly Publishing Literacy at the University of South Florida Libraries: From Advising to Active Involvement

Authors : Chelsea Johnston, Jason Boczar

INTRODUCTION

Successful open access (OA) publishing in libraries requires careful guidance and organization. Support and services offered vary depending on available resources as well as the robustness of a library’s publishing program.

DESCRIPTION OF PROGRAM

This article describes the connection between publishing services and scholarly publishing literacy through examples from the University of South Florida (USF) Libraries.

The USF Libraries’ OA publishing program includes journals, textbooks, conference proceedings, and more. Our program balances advocating for open access with advising for actions that serve our partners’ goals. This invites trust, sustainable relationships, and opportunities for new work.

NEXT STEPS

At the USF Libraries, more work must be done to formally assess our efforts. Our program will also explore new ways to support the ethical standards expected of libraries by pursuing stronger policies on diversity and inclusion.

Using everyday work to demonstrate best practices is a manageable way to strengthen scholarly publishing efforts. We hope to continue growing our services, empowering our partners, and exploring our roles as advisors and advocates.

URL : Scholarly Publishing Literacy at the University of South Florida Libraries: From Advising to Active Involvement

DOI : https://doi.org/10.7710/2162-3309.2310