Archives des mots-clés : research data

Establishing, Developing, and Sustaining a Community of Data Champions

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Authors : James L. Savage, Lauren Cadwallader

Supporting good practice in Research Data Management (RDM) is challenging for higher education institutions, in part because of the diversity of research practices and data types across disciplines.

While centralised research data support units now exist in many universities, these typically possess neither the discipline-specific expertise nor the resources to offer appropriate targeted training and support within every academic unit.

One solution to this problem is to identify suitable individuals with discipline-specific expertise that are already embedded within each unit, and empower these individuals to advocate for good RDM and to deliver support locally.

This article focuses on an ongoing example of this approach: the Data Champion Programme at the University of Cambridge, UK.

We describe how the Data Champion programme was established; the programme’s reach, impact, strengths and weaknesses after two years of operation; and our anticipated challenges and planned strategies for maintaining the programme over the medium- and long-term.

URL : Establishing, Developing, and Sustaining a Community of Data Champions

DOI : http://doi.org/10.5334/dsj-2019-023

Data Sharing Practices among Researchers at South African Universities

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Authors : Siviwe Bangani, Mathew Moyo

Research data management practices have gained momentum the world over. This is due to increased demands by governments and other funding agencies to have research data archived and shared as widely as possible.

This paper sought to establish the data sharing practices of researchers in South Africa. The study further sought to establish the level of collaboration among researchers in sharing research data at the university level.

The outcomes of the survey will help the researchers to develop appropriate data literacy awareness programmes meant to stimulate growth in data sharing practices for the benefit of research, not only in South Africa, but the world at large.

A survey research method was used to gather data from willing public universities in South Africa. A similar study was conducted in other countries such as the United Kingdom, France and Turkey but the Researchers believe that circumstances in the developed world may differ with the South African research environment, hence the current study.

The major finding of this study was that most researchers preferred to use data produced by others but less keen on sharing their own data.

This study is the first of its kind in South Africa which investigates data sharing practices of researchers from multi-disciplinary fields at the university level and will contribute immensely to the growing body of literature in the area of research data management.

URL : Data Sharing Practices among Researchers at South African Universities

DOI : http://doi.org/10.5334/dsj-2019-028

The Landscape of Rights and Licensing Initiatives for Data Sharing

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Authors : Sam Grabus, Jane Greenberg

Over the last twenty years, a wide variety of resources have been developed to address the rights and licensing problems inherent with contemporary data sharing practices.

The landscape of developments is this area is increasingly confusing and difficult to navigate, due to the complexity of intellectual property and ethics issues associated with sharing sensitive data.

This paper seeks to address this challenge, examining the landscape and presenting a Version 1.0 directory of resources. A multi-method study was pursued, with an environmental scan examining 20 resources, resulting in three high-level categories: standards, tools, and community initiatives; and a content analysis revealing the subcategories of rights, licensing, metadata & ontologies.

A timeline confirms a shift in licensing standardization priorities from open data to more nuanced and technologically robust solutions, over time, to accommodate for more sensitive data types.

This paper reports on the research undertaking, and comments on the potential for using license-specific metadata supplements and developing data-centric rights and licensing ontologies.

URL : The Landscape of Rights and Licensing Initiatives for Data Sharing

DOI : http://doi.org/10.5334/dsj-2019-029

Implementing the FAIR Data Principles in precision oncology: review of supporting initiatives

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Authors : Charles Vesteghem, Rasmus Froberg Brøndum, Mads Sønderkær, Mia Sommer, Alexander Schmitz, Julie Støve Bødker, Karen Dybkær, Tarec Christoffer El-Galaly, Martin Bøgsted

Compelling research has recently shown that cancer is so heterogeneous that single research centres cannot produce enough data to fit prognostic and predictive models of sufficient accuracy. Data sharing in precision oncology is therefore of utmost importance.

The Findable, Accessible, Interoperable and Reusable (FAIR) Data Principles have been developed to define good practices in data sharing. Motivated by the ambition of applying the FAIR Data Principles to our own clinical precision oncology implementations and research, we have performed a systematic literature review of potentially relevant initiatives.

For clinical data, we suggest using the Genomic Data Commons model as a reference as it provides a field-tested and well-documented solution. Regarding classification of diagnosis, morphology and topography and drugs, we chose to follow the World Health Organization standards, i.e. ICD10, ICD-O-3 and Anatomical Therapeutic Chemical classifications, respectively.

For the bioinformatics pipeline, the Genome Analysis ToolKit Best Practices using Docker containers offer a coherent solution and have therefore been selected. Regarding the naming of variants, we follow the Human Genome Variation Society’s standard.

For the IT infrastructure, we have built a centralized solution to participate in data sharing through federated solutions such as the Beacon Networks.

URL : Implementing the FAIR Data Principles in precision oncology: review of supporting initiatives

DOI : https://doi.org/10.1093/bib/bbz044

The citation advantage of linking publications to research data

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Authors : Giovanni Colavizza, Iain Hrynaszkiewicz, Isla Staden, Kirstie Whitaker, Barbara McGillivray

Efforts to make research results open and reproducible are increasingly reflected by journal policies encouraging or mandating authors to provide data availability statements.

As a consequence of this, there has been a strong uptake of data availability statements in recent literature. Nevertheless, it is still unclear what proportion of these statements actually contain well-formed links to data, for example via a URL or permanent identifier, and if there is an added value in providing them.

We consider 531,889 journal articles published by PLOS and BMC which are part of the PubMed Open Access collection, categorize their data availability statements according to their content and analyze the citation advantage of different statement categories via regression.

We find that, following mandated publisher policies, data availability statements have become common by now, yet statements containing a link to a repository are still just a fraction of the total.

We also find that articles with these statements, in particular, can have up to 25.36% higher citation impact on average: an encouraging result for all publishers and authors who make the effort of sharing their data. All our data and code are made available in order to reproduce and extend our results.

URL : https://arxiv.org/abs/1907.02565

A model for initiating research data management services at academic libraries

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Authors : Kevin B. Read, Jessica Koos, Rebekah S. Miller, Cathryn F. Miller, Gesina A. Phillips, Laurel Scheinfeld, Alisa Surkis

Background

Librarians developed a pilot program to provide training, resources, strategies, and support for medical libraries seeking to establish research data management (RDM) services. Participants were required to complete eight educational modules to provide the necessary background in RDM.

Each participating institution was then required to use two of the following three elements: (1) a template and strategies for data interviews, (2) a teaching tool kit to teach an introductory RDM class, or (3) strategies for hosting a data class series.

Case Presentation

Six libraries participated in the pilot, with between two and eight librarians participating from each institution. Librarians from each institution completed the online training modules.

Each institution conducted between six and fifteen data interviews, which helped build connections with researchers, and taught between one and five introductory RDM classes.

All classes received very positive evaluations from attendees. Two libraries conducted a data series, with one bringing in instructors from outside the library.

Conclusion

The pilot program proved successful in helping participating librarians learn about and engage with their research communities, jump-start their teaching of RDM, and develop institutional partnerships around RDM services.

The practical, hands-on approach of this pilot proved to be successful in helping libraries with different environments establish RDM services.

The success of this pilot provides a proven path forward for libraries that are developing data services at their own institutions.

URL : A model for initiating research data management services at academic libraries

Alternative location : http://jmla.pitt.edu/ojs/jmla/article/view/545

Developing a research data policy framework for all journals and publishers

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Authors : Iain Hrynaszkiewicz​, Natasha Simons​, Azhar Hussain​,​ Simon Goudie

More journals and publishers – and funding agencies and institutions – are introducing research data policies. But as the prevalence of policies increases, there is potential to confuse researchers and support staff with numerous or conflicting policy requirements.

We define and describe 14 features of journal research data policies and arrange these into a set of six standard policy types or tiers, which can be adopted by journals and publishers to promote data sharing in a way that encourages good practice and is appropriate for their audience’s perceived needs.

Policy features include coverage of topics such as data citation, data repositories, data availability statements, data standards and formats, and peer review of research data.

These policy features and types have been created by reviewing the policies of multiple scholarly publishers, which collectively publish more than 10,000 journals, and through discussions and consensus building with multiple stakeholders in research data policy via the Data Policy Standardisation and Implementation Interest Group of the Research Data Alliance.

Implementation guidelines for the standard research data policies for journals and publishers are also provided, along with template policy texts which can be implemented by journals in their Information for Authors and publishing workflows.

We conclude with a call for collaboration across the scholarly publishing and wider research community to drive further implementation and adoption of consistent research data policies.

URL : Developing a research data policy framework for all journals and publishers

Alternative location : https://figshare.com/articles/Developing_a_research_data_policy_framework_for_all_journals_and_publishers/8223365/1