Archives des mots-clés : Preprint

Scholarly publishing and journal targeting in the time of the Coronavirus Disease 2019 (COVID-19) pandemic: a cross-sectional survey of rheumatologists and other specialists

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Authors : Latika Gupta, Armen Yuri Gasparyan, Olena Zimba, Durga Prasanna Misra

The evolving research landscape in the time of the Coronavirus disease 2019 (COVID-19) pandemic calls for greater understanding of the perceptions of scholars regarding the current state and future of publishing.

An anonymised and validated e-survey featuring 30 questions was circulated among rheumatologists and other specialists over social media to understand preferences while choosing target journals, publishing standards, commercial editing services, preprint archiving, social media and alternative publication activities.

Of 108 respondents, a significant proportion were clinicians (68%), researchers (60%) and educators (47%), with median 23 publications and 15 peer-review accomplishments. The respondents were mainly rheumatologists from India, Ukraine and Turkey.

While choosing target journals, relevance to their field (69%), PubMed Central archiving (61%) and free publishing (59%) were the major factors. Thirty-nine surveyees (36%) claimed that they often targeted local journals for publishing their research. However, only 18 (17%) perceived their local society journals as trustworthy.

Occasional publication in the so-called predatory journals (5, 5%) was reported and obtaining support from commercial editing agencies to improve English and data presentation was not uncommon (23, 21%).

The opinion on preprint archiving was disputed; only one-third believed preprints were useful. High-quality peer review (56%), full and immediate open access (46%) and post-publication social media promotion (32%) were identified as key anticipated features of scholarly publishing in the foreseeable future.

These perceptions of surveyed scholars call for greater access to free publishing, attention to proper usage of English and editing skills, and a larger role for engagement over social media.

URL : Scholarly publishing and journal targeting in the time of the Coronavirus Disease 2019 (COVID-19) pandemic: a cross-sectional survey of rheumatologists and other specialists

DOI : https://doi.org/10.1007/s00296-020-04718-x

Preprints as accelerator of scholarly communication: An empirical analysis in Mathematics

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Authors : Zhiqi Wang, Yue Chen, Wolfgang Glänzel

In this study we analyse the key driving factors of preprints in enhancing scholarly communication. To this end we use four groups of metrics, one referring to scholarly communication and based on bibliometric indicators (Web of Science and Scopus citations), while the others reflect usage (usage counts in Web of Science), capture (Mendeley readers) and social media attention (Tweets).

Hereby we measure two effects associated with preprint publishing: publication delay and impact. We define and use several indicators to assess the impact of journal articles with previous preprint versions in arXiv. In particular, the indicators measure several times characterizing the process of arXiv preprints publishing and the reviewing process of the journal versions, and the ageing patterns of citations to preprints.

In addition, we compare the observed patterns between preprints and non-OA articles without any previous preprint versions in arXiv. We could observe that the “early-view” and “open-access” effects of preprints contribute to a measurable citation and readership advantage of preprints.

Articles with preprint versions are more likely to be mentioned in social media and have shorter Altmetric attention delay. Usage and capture prove to have only moderate but stronger correlation with citations than Tweets. The different slopes of the regression lines between the different indicators reflect different order of magnitude of usage, capture and citation data.

URL : https://arxiv.org/abs/2011.11940

Characteristics of academic publications, preprints, and registered clinical trials on the COVID-19 pandemic

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Authors : Silvia Gianola, Tiago S. Jesus, Silvia Bargeri, Greta Castellini

The COVID-19 pandemic has unleashed a deluge of publications. For this cross-sectional study we compared the amount and reporting characteristics of COVID-19-related academic articles and preprints and the number of ongoing clinical trials and systematic reviews.

To do this, we searched the PubMed database of citations and abstracts for published life science journals by using appropriate combinations of medical subject headings (MeSH terms), and the COVID-19 section of the MedRxiv and BioRxiv archives up to 20 May 2020 (21 weeks).

In addition, we searched Clinicaltrial.gov, Chinese Clinical Trial Registry, EU Clinical Trials Register, and 15 other trial registers, as well as PROSPERO, the international prospective register of systematic reviews.

The characteristics of each publication were extracted. Regression analyses and Z tests were used to detect publication trends and their relative proportions. A total of 3635 academic publications and 3805 preprints were retrieved. Only 8.6% (n = 329) of the preprints were already published in indexed journals. The number of academic and preprint publications increased significantly over time (p<0.001).

Case reports (6% academic vs 0.9% preprints; p<0.001) and letters (17.4% academic vs 0.5% preprints; p<0.001) accounted for a greater share of academic compared to preprint publications. Differently, randomized controlled trials (0.22% vs 0.63%; p<0.001) and systematic reviews (0.08% vs 5%) made up a greater share of the preprints.

The relative proportion of clinical studies registered at Clinicaltrials.gov, Chinese Clinical Trial Registry, and EU Clinical Trials Register was 57.9%, 49.5%, and 98.9%, respectively, most of which were still “recruiting”.

PROSPERO listed 962 systematic review protocols. Preprints were slightly more prevalent than academic articles but both were increasing in number.

The void left by the lack of primary studies was filled by an outpour of immediate opinions (i.e., letters to the editor) published in PubMed-indexed journals. Summarizing, preprints have gained traction as a publishing response to the demand for prompt access to empirical, albeit not peer-reviewed, findings during the present pandemic.

URL : Characteristics of academic publications, preprints, and registered clinical trials on the COVID-19 pandemic

DOI : https://doi.org/10.1371/journal.pone.0240123

Quantifying and contextualizing the impact of bioRxiv preprints through automated social media audience segmentation

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Authors : Jedidiah Carlson, Kelley Harris

Engagement with scientific manuscripts is frequently facilitated by Twitter and other social media platforms. As such, the demographics of a paper’s social media audience provide a wealth of information about how scholarly research is transmitted, consumed, and interpreted by online communities.

By paying attention to public perceptions of their publications, scientists can learn whether their research is stimulating positive scholarly and public thought. They can also become aware of potentially negative patterns of interest from groups that misinterpret their work in harmful ways, either willfully or unintentionally, and devise strategies for altering their messaging to mitigate these impacts.

In this study, we collected 331,696 Twitter posts referencing 1,800 highly tweeted bioRxiv preprints and leveraged topic modeling to infer the characteristics of various communities engaging with each preprint on Twitter.

We agnostically learned the characteristics of these audience sectors from keywords each user’s followers provide in their Twitter biographies. We estimate that 96% of the preprints analyzed are dominated by academic audiences on Twitter, suggesting that social media attention does not always correspond to greater public exposure.

We further demonstrate how our audience segmentation method can quantify the level of interest from nonspecialist audience sectors such as mental health advocates, dog lovers, video game developers, vegans, bitcoin investors, conspiracy theorists, journalists, religious groups, and political constituencies.

Surprisingly, we also found that 10% of the preprints analyzed have sizable (>5%) audience sectors that are associated with right-wing white nationalist communities. Although none of these preprints appear to intentionally espouse any right-wing extremist messages, cases exist in which extremist appropriation comprises more than 50% of the tweets referencing a given preprint.

These results present unique opportunities for improving and contextualizing the public discourse surrounding scientific research.

URL : Quantifying and contextualizing the impact of bioRxiv preprints through automated social media audience segmentation

DOI : https://doi.org/10.1371/journal.pbio.3000860

International authorship and collaboration across bioRxiv preprints

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Authors : Richard J Abdill, Elizabeth M Adamowicz, Ran Blekhman

Preprints are becoming well established in the life sciences, but relatively little is known about the demographics of the researchers who post preprints and those who do not, or about the collaborations between preprint authors.

Here, based on an analysis of 67,885 preprints posted on bioRxiv, we find that some countries, notably the United States and the United Kingdom, are overrepresented on bioRxiv relative to their overall scientific output, while other countries (including China, Russia, and Turkey) show lower levels of bioRxiv adoption.

We also describe a set of ‘contributor countries’ (including Uganda, Croatia and Thailand): researchers from these countries appear almost exclusively as non-senior authors on international collaborations.

Lastly, we find multiple journals that publish a disproportionate number of preprints from some countries, a dynamic that almost always benefits manuscripts from the US.

URL :  International authorship and collaboration across bioRxiv preprints

DOI : https://doi.org/10.7554/eLife.58496

Building trust in preprints: recommendations for servers and other stakeholders

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Authors : Jeffrey Beck, Christine Ferguson, Kathryn Funk, Brooks Hanson, Melissa Harrison, Michele Ide-Smith, Rachael Lammey, Maria Levchenko, Alex Mendonça, Michael Parkin, Naomi Penfold, Nicole Pfeiffer, Jessica Polka, Iratxe Puebla, Oya Y Rieger, Martyn Rittman, Richard Sever, Sowmya Swaminathan

On January 20 and 21, 2020, ASAPbio, in collaboration with EMBL-EBI and Ithaka S+R, convened over 30 representatives from academia, preprint servers, publishers, funders, and standards, indexing and metadata infrastructure organisations at EMBL-EBI (Hinxton, UK) to develop a series of recommendations for best practices for posting and linking of preprints in the life sciences and ideally the broader research community.

We hope that these recommendations offer guidance for new preprint platforms and projects looking to enact best practices and ultimately serve to improve the experience of using preprints for all.

URL : Building trust in preprints: recommendations for servers and other stakeholders

DOI : https://doi.org/10.31219/osf.io/8dn4w

On the Potential of Preprints in Geochemistry: The Good, the Bad, and the Ugly

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Authors : Olivier Pourret, Dasapta Erwin Irawan, Jonathan P. Tennant

In recent years, the pace of the dissemination of scientific information has increased. In this context, the possibility and value of sharing open access (OA) online manuscripts in their preprint form seem to be growing in many scientific fields. More and more platforms are especially dedicated to free preprint publishing.

They are published, non-peer-reviewed scholarly papers that typically precede publication in a peer-reviewed journal. They have been a part of science since at least the 1960s.

In 1990, Tim Berners-Lee created the World Wide Web to help researchers share knowledge easily. A few months later, in August 1991, as a centralized web-based network, arXiv was created. arXiv is arguably the most influential preprint platform and has supported the fields of physics, mathematics and computer science for over 30 years.

Since, preprint platforms have become popular in many disciplines (e.g., bioRxiv for biological sciences) due to the increasing drive towards OA publishing, and can be publisher- or community-driven, profit or not for profit, and based on proprietary or free and open source software. A range of discipline-specific or cross-domain platforms now exist, with exponential growth these last five years.

While preprints as a whole still represent only a small proportion of scholarly publishing, a strong community of early adopters is already beginning to experiment with such value-enhancing tools in many more disciplines than before.

The two main options for geochemists are EarthArXiv and ESSOAr. A “one size fits all” model for preprints would never work across the entire scientific community. The geochemistry community needs to develop and sustain their own model.

URL : On the Potential of Preprints in Geochemistry: The Good, the Bad, and the Ugly

DOI : https://doi.org/10.3390/su12083360