Étiquette : Preprint

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Quantifying and contextualizing the impact of bioRxiv preprints through automated social media audience segmentation

Authors : Jedidiah Carlson, Kelley Harris

Engagement with scientific manuscripts is frequently facilitated by Twitter and other social media platforms. As such, the demographics of a paper’s social media audience provide a wealth of information about how scholarly research is transmitted, consumed, and interpreted by online communities.

By paying attention to public perceptions of their publications, scientists can learn whether their research is stimulating positive scholarly and public thought. They can also become aware of potentially negative patterns of interest from groups that misinterpret their work in harmful ways, either willfully or unintentionally, and devise strategies for altering their messaging to mitigate these impacts.

In this study, we collected 331,696 Twitter posts referencing 1,800 highly tweeted bioRxiv preprints and leveraged topic modeling to infer the characteristics of various communities engaging with each preprint on Twitter.

We agnostically learned the characteristics of these audience sectors from keywords each user’s followers provide in their Twitter biographies. We estimate that 96% of the preprints analyzed are dominated by academic audiences on Twitter, suggesting that social media attention does not always correspond to greater public exposure.

We further demonstrate how our audience segmentation method can quantify the level of interest from nonspecialist audience sectors such as mental health advocates, dog lovers, video game developers, vegans, bitcoin investors, conspiracy theorists, journalists, religious groups, and political constituencies.

Surprisingly, we also found that 10% of the preprints analyzed have sizable (>5%) audience sectors that are associated with right-wing white nationalist communities. Although none of these preprints appear to intentionally espouse any right-wing extremist messages, cases exist in which extremist appropriation comprises more than 50% of the tweets referencing a given preprint.

These results present unique opportunities for improving and contextualizing the public discourse surrounding scientific research.

URL : Quantifying and contextualizing the impact of bioRxiv preprints through automated social media audience segmentation

DOI : https://doi.org/10.1371/journal.pbio.3000860

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International authorship and collaboration across bioRxiv preprints

Authors : Richard J Abdill, Elizabeth M Adamowicz, Ran Blekhman

Preprints are becoming well established in the life sciences, but relatively little is known about the demographics of the researchers who post preprints and those who do not, or about the collaborations between preprint authors.

Here, based on an analysis of 67,885 preprints posted on bioRxiv, we find that some countries, notably the United States and the United Kingdom, are overrepresented on bioRxiv relative to their overall scientific output, while other countries (including China, Russia, and Turkey) show lower levels of bioRxiv adoption.

We also describe a set of ‘contributor countries’ (including Uganda, Croatia and Thailand): researchers from these countries appear almost exclusively as non-senior authors on international collaborations.

Lastly, we find multiple journals that publish a disproportionate number of preprints from some countries, a dynamic that almost always benefits manuscripts from the US.

URL :  International authorship and collaboration across bioRxiv preprints

DOI : https://doi.org/10.7554/eLife.58496

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Building trust in preprints: recommendations for servers and other stakeholders

Authors : Jeffrey Beck, Christine Ferguson, Kathryn Funk, Brooks Hanson, Melissa Harrison, Michele Ide-Smith, Rachael Lammey, Maria Levchenko, Alex Mendonça, Michael Parkin, Naomi Penfold, Nicole Pfeiffer, Jessica Polka, Iratxe Puebla, Oya Y Rieger, Martyn Rittman, Richard Sever, Sowmya Swaminathan

On January 20 and 21, 2020, ASAPbio, in collaboration with EMBL-EBI and Ithaka S+R, convened over 30 representatives from academia, preprint servers, publishers, funders, and standards, indexing and metadata infrastructure organisations at EMBL-EBI (Hinxton, UK) to develop a series of recommendations for best practices for posting and linking of preprints in the life sciences and ideally the broader research community.

We hope that these recommendations offer guidance for new preprint platforms and projects looking to enact best practices and ultimately serve to improve the experience of using preprints for all.

URL : Building trust in preprints: recommendations for servers and other stakeholders

DOI : https://doi.org/10.31219/osf.io/8dn4w

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On the Potential of Preprints in Geochemistry: The Good, the Bad, and the Ugly

Authors : Olivier Pourret, Dasapta Erwin Irawan, Jonathan P. Tennant

In recent years, the pace of the dissemination of scientific information has increased. In this context, the possibility and value of sharing open access (OA) online manuscripts in their preprint form seem to be growing in many scientific fields. More and more platforms are especially dedicated to free preprint publishing.

They are published, non-peer-reviewed scholarly papers that typically precede publication in a peer-reviewed journal. They have been a part of science since at least the 1960s.

In 1990, Tim Berners-Lee created the World Wide Web to help researchers share knowledge easily. A few months later, in August 1991, as a centralized web-based network, arXiv was created. arXiv is arguably the most influential preprint platform and has supported the fields of physics, mathematics and computer science for over 30 years.

Since, preprint platforms have become popular in many disciplines (e.g., bioRxiv for biological sciences) due to the increasing drive towards OA publishing, and can be publisher- or community-driven, profit or not for profit, and based on proprietary or free and open source software. A range of discipline-specific or cross-domain platforms now exist, with exponential growth these last five years.

While preprints as a whole still represent only a small proportion of scholarly publishing, a strong community of early adopters is already beginning to experiment with such value-enhancing tools in many more disciplines than before.

The two main options for geochemists are EarthArXiv and ESSOAr. A “one size fits all” model for preprints would never work across the entire scientific community. The geochemistry community needs to develop and sustain their own model.

URL : On the Potential of Preprints in Geochemistry: The Good, the Bad, and the Ugly

DOI : https://doi.org/10.3390/su12083360

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The relationship between bioRxiv preprints, citations and altmetrics

Authors : Nicholas Fraser, Fakhri Momeni, Philipp Mayr, Isabella Peters

A potential motivation for scientists to deposit their scientific work as preprints is to enhance its citation or social impact. In this study we assessed the citation and altmetric advantage of bioRxiv, a preprint server for the biological sciences.

We retrieved metadata of all bioRxiv preprints deposited between November 2013 and December 2017, and matched them to articles that were subsequently published in peer-reviewed journals.

Citation data from Scopus and altmetric data from Altmetric.com were used to compare citation and online sharing behavior of bioRxiv preprints, their related journal articles, and nondeposited articles published in the same journals. We found that bioRxiv-deposited journal articles had sizably higher citation and altmetric counts compared to nondeposited articles.

Regression analysis reveals that this advantage is not explained by multiple explanatory variables related to the articles’ publication venues and authorship. Further research will be required to establish whether such an effect is causal in nature.

bioRxiv preprints themselves are being directly cited in journal articles, regardless of whether the preprint has subsequently been published in a journal. bioRxiv preprints are also shared widely on Twitter and in blogs, but remain relatively scarce in mainstream media and Wikipedia articles, in comparison to peer-reviewed journal articles.

DOI : https://doi.org/10.1162/qss_a_00043

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A systematic examination of preprint platforms for use in the medical and biomedical sciences setting

Authors : Jamie J Kirkham, Naomi Penfold, Fiona Murphy, Isabelle Boutron, John PA Ioannidis, Jessica K Polka, David Moher

Objectives

The objective of this review is to identify all preprint platforms with biomedical and medical scope and to compare and contrast the key characteristics and policies of these platforms. We also aim to provide a searchable database to enable relevant stakeholders to compare between platforms.

Study Design and Setting

Preprint platforms that were launched up to 25th June 2019 and have a biomedical and medical scope according to MEDLINE’s journal selection criteria were identified using existing lists, web-based searches and the expertise of both academic and non-academic publication scientists.

A data extraction form was developed, pilot-tested and used to collect data from each preprint platform’s webpage(s). Data collected were in relation to scope and ownership; content-specific characteristics and information relating to submission, journal transfer options, and external discoverability; screening, moderation, and permanence of content; usage metrics and metadata.

Where possible, all online data were verified by the platform owner or representative by correspondence.

Results

A total of 44 preprint platforms were identified as having biomedical and medical scope, 17 (39%) were hosted by the Open Science Framework preprint infrastructure, six (14%) were provided by F1000 Research Ltd (the Open Research Central infrastructure) and 21 (48%) were other independent preprint platforms. Preprint platforms were either owned by non-profit academic groups, scientific societies or funding organisations (n=28; 64%), owned/partly owned by for-profit publishers or companies (n=14; 32%) or owned by individuals/small communities (n=2; 5%).

Twenty-four (55%) preprint platforms accepted content from all scientific fields although some of these had restrictions relating to funding source, geographical region or an affiliated journal’s remit.

Thirty-three (75%) preprint platforms provided details about article screening (basic checks) and 14 (32%) of these actively involved researchers with context expertise in the screening process.

The three most common screening checks related to the scope of the article, plagiarism and legal/ethical/societal issues and compliance. Almost all preprint platforms allow submission to any peer-reviewed journal following publication, have a preservation plan for read-access, and most have a policy regarding reasons for retraction and the sustainability of the service.

Forty-one (93%) platforms currently have usage metrics, with the most common metric being the number of downloads presented on the abstract page.

Conclusion

A large number of preprint platforms exist for use in biomedical and medical sciences, all of which offer researchers an opportunity to rapidly disseminate their research findings onto an open-access public server, subject to scope and eligibility.

However, the process by which content is screened before online posting and withdrawn or removed after posting varies between platforms, which may be associated with platform operation, ownership, governance and financing.

DOI : https://doi.org/10.1101/2020.04.27.063578

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Open Access and Altmetrics in the pandemic age: Forescast analysis on COVID-19 literature

Authors : Daniel Torres-Salinas, Nicolas Robinson-Garcia, Pedro A. Castillo-Valdivieso

We present an analysis on the uptake of open access on COVID-19 related literature as well as the social media attention they gather when compared with non OA papers.

We use a dataset of publications curated by Dimensions and analyze articles and preprints. Our sample includes 11,686 publications of which 67.5% are openly accessible.

OA publications tend to receive the largest share of social media attention as measured by the Altmetric Attention Score. 37.6% of OA publications are bronze, which means toll journals are providing free access.

MedRxiv contributes to 36.3% of documents in repositories but papers in BiorXiv exhibit on average higher AAS. We predict the growth of COVID-19 literature in the following 30 days estimating ARIMA models for the overall publications set, OA vs. non OA and by location of the document (repository vs. journal).

We estimate that COVID-19 publications will double in the next 20 days, but non OA publications will grow at a higher rate than OA publications. We conclude by discussing the implications of such findings on the dissemination and communication of research findings to mitigate the coronavirus outbreak.

DOI : https://doi.org/10.1101/2020.04.23.057307