For how long and with what relevance do genetics articles retracted due to research misconduct remain active in the scientific literature

Authors : Rafael Dal-Ré, Carmen Ayuso

We aimed to quantify the number of pre- and post-retraction citations obtained by genetics articles retracted due to research misconduct. All retraction notices available in the Retraction Watch database for genetics articles published in 1970–2016 were assessed.

The reasons for retraction were fabrication/falsification and plagiarism. The endpoints were the number of citations of retracted articles and when and how journals reported on retractions and whether this was published on PubMed.

Four hundred and sixty retracted genetics articles were cited 34,487 times; 7,945 (23%) were post-retraction citations. Median time to retraction and time to last citation were 3.2 and 3 years, respectively. Most (96%) had a PubMed retraction notice, One percent of these were totally removed from journal websites altogether, and 4% had no information available on either the online or PDF versions.

Ninety percent of citations were from articles retracted due to falsification/fabrication. The percentage of post-retraction citations was significantly higher in the case of plagiarism (42%) than in the case of fabrication/falsification (21.5%) (p<0.001). Median time to retraction was shorter (1.3 years) in the case of plagiarism than for fabrication/falsification (4.8 years, p<0.001).

The retraction was more frequently reported in the PDFs (70%) for the fabrication/falsification cases than for the plagiarism cases (43%, p<0.001). The highest rate of retracted papers due to falsification/fabrication was among authors in the USA, and the highest rate for plagiarism was in China.

Although most retractions were appropriately handled by journals, the gravest issue was that median time to retraction for articles retracted for falsification/fabrication was nearly 5 years, earning close to 6800 post-retraction citations. Journals should implement processes to speed-up the retraction process that will help to minimize post-retraction citations.

URL : For how long and with what relevance do genetics articles retracted due to research misconduct remain active in the scientific literature

DOI : https://doi.org/10.1080/08989621.2020.1835479

Open Research Data and Open Peer Review: Perceptions of a Medical and Health Sciences Community in Greece

Authors : Eirini Delikoura, Dimitrios Kouis

Recently significant initiatives have been launched for the dissemination of Open Access as part of the Open Science movement. Nevertheless, two other major pillars of Open Science such as Open Research Data (ORD) and Open Peer Review (OPR) are still in an early stage of development among the communities of researchers and stakeholders.

The present study sought to unveil the perceptions of a medical and health sciences community about these issues. Through the investigation of researchers‘ attitudes, valuable conclusions can be drawn, especially in the field of medicine and health sciences, where an explosive growth of scientific publishing exists.

A quantitative survey was conducted based on a structured questionnaire, with 179 valid responses. The participants in the survey agreed with the Open Peer Review principles. However, they ignored basic terms like FAIR (Findable, Accessible, Interoperable, and Reusable) and appeared incentivized to permit the exploitation of their data.

Regarding Open Peer Review (OPR), participants expressed their agreement, implying their support for a trustworthy evaluation system.

Conclusively, researchers need to receive proper training for both Open Research Data principles and Open Peer Review processes which combined with a reformed evaluation system will enable them to take full advantage of the opportunities that arise from the new scholarly publishing and communication landscape.

URL : Open Research Data and Open Peer Review: Perceptions of a Medical and Health Sciences Community in Greece

DOI : https://doi.org/10.3390/publications9020014

Preprint Abstracts in Times of Crisis: a Comparative Study with the Pre-pandemic Period

Authors : Frédérique Bordignon, Liana Ermakova, Marianne Noel

The urgency to respond to the COVID-19 outbreak has driven an unprecedented surge in preprints that aim to speed up knowledge dissemination as they are available much sooner than peer-reviewed publications.

In this study we consider abstracts of research articles and preprints as main entry points that draw attention to the most important information of the document and that try to entice us to read the whole article. In this paper, we try to capture and examine shifts in scientific abstract writing produced at the very beginning of the pandemic.

We made a comparative study of abstracts in terms of their informativeness associated with preprints issued in response to the COVID-19 pandemic and those produced in 2019, the closest pre-pandemic period. Our results clearly differ from one preprint server to another and show that there are community-centered habits as regards writing and reporting results.

The preprints issued from the arXiv, ChemRxiv and Research Square servers tend to have more informative (generous) abstracts than the ones submitted to the other servers. In four servers, the ratio of structured abstracts decreases with the pandemic.

URL : Preprint Abstracts in Times of Crisis: a Comparative Study with the Pre-pandemic Period

Original location : https://hal-enpc.archives-ouvertes.fr/hal-03187900

Wiki Trans : une communauté de savoir sur la transidentité

Auteur/Author : Bérengère Stassin

Cet article porte sur Wiki Trans, un site collaboratif créé par une femme transgenre pour permettre la mise en commun d’expériences et le partage d’informations liées aux aspects sociaux et médicaux de la transidentité et répondre aux besoins informationnels qu’elle suscite.

Le site vise à centraliser des informations dispersées au sein du web, à traduire en français des ressources anglophones et à vulgariser de l’information médicale et scientifique. Ce projet favorise l’émergence d’une communauté de savoir en ligne composée de personnes transgenres et cisgenres, de bénévoles et de médecins.

Une hybridation entre savoirs expérientiels et savoirs experts est alors observée.

DOI : https://doi.org/10.4000/ctd.3723

Fear of the academic fake? Journal editorials and the amplification of the ‘predatory publishing’ discourse

Authors : Kelsey Inouye, David Mills

This analysis of 229 editorials and opinion pieces published in science and medical journals explores the affective discourses used to characterise so‐called predatory publishing. Most (84%, n = 193) deploy one or more of three related categories of metaphorical and figurative language (fear, fakery and exploitation) to strengthen their rhetorical case.

This paper examines the deployment, co‐occurrence and amplification of this language across the science publishing system, focusing particularly on the role of major science journals in adopting and normalising this emotive discourse.

The analysis shows how few editorials offer alternative perspectives on these developments (n = 9), and their relative invisibility in scholarly debates.

URL : Fear of the academic fake? Journal editorials and the amplification of the ‘predatory publishing’ discourse

DOI : https://doi.org/10.1002/leap.1377

Accuracy of PubMed-based author lists of publications and use of author identifiers to address author name ambiguity: a cross-sectional study

Authors : Paul Sebo, Sylvain de Lucia, Nathalie Vernaz

Objective

To assess the accuracy of PubMed-based author lists of publications and use of author identifiers to address author name ambiguity.

Methods

In this Swiss study conducted in 2019, 300 hospital-based senior physicians were asked to generate a list of their publications in PubMed and complete a questionnaire (type of query used, number of errors in their list of publications, knowledge and use of ORCID and ResearcherID).

Results

156 physicians (52%) agreed to participate, 145 of whom published at least one article (mean number of publications: 60 (SD 73)). Only 17% used the advanced search option. On average, there were 5 articles in the lists that were not co-authored by participants (advanced search: 1.0 (SD 2.6) vs. 5.9 (SD 13.9), p value 0.02) and 3 articles co-authored by participants that did not appear in the lists (advanced search: 1.5 (SD 2.0) vs. 3.6 (SD 8.4), p-value 0.05). Although 82% were aware of ORCID, only 16% added all their articles (39% and 6% respectively for ResearcherID).

Conclusions

When used by senior physicians, the advanced search in PubMed is accurate for retrieving authors’ publications. Author identifiers are only used by a minority of physicians and are therefore not recommended in this context, as they would lead to inaccurate results.

URL : Accuracy of PubMed-based author lists of publications and use of author identifiers to address author name ambiguity: a cross-sectional study

DOI : https://doi.org/10.1007/s11192-020-03845-3

Openness in Big Data and Data Repositories. The Application of an Ethics Framework for Big Data in Healthand Research

Authors : Vicki Xafis, Markus K. Labude

There is a growing expectation, or even requirement, for researchers to deposit a variety of research data in data repositories as a condition of funding or publication. This expectation recognizes the enormous benefits of data collected and created for research purposes being made available for secondary uses, as open science gains increasing support.

This is particularly so in the context of big data, especially where health data is involved. There are, however, also challenges relating to the collection, storage, and re-use of research data.

This paper gives a brief overview of the landscape of data sharing via data repositories and discusses some of the key ethical issues raised by the sharing of health-related research data, including expectations of privacy and confidentiality, the transparency of repository governance structures, access restrictions, as well as data ownership and the fair attribution of credit.

To consider these issues and the values that are pertinent, the paper applies the deliberative balancing approach articulated in the Ethics Framework for Big Data in Health and Research (Xafis et al. 2019) to the domain of Openness in Big Data and Data Repositories.

Please refer to that article for more information on how this framework is to be used, including a full explanation of the key values involved and the balancing approach used in the case study at the end.

URL : Openness in Big Data and Data Repositories. The Application of an Ethics Framework for Big Data in Healthand Research

DOI : https://doi.org/10.1007/s41649-019-00097-z