Towards an Interoperable Digital Scholarly Edition

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“Recent proposals for creating digital scholarly editions (DSEs) through the crowdsourcing of transcriptions and collaborative scholarship, for the establishment of national repositories of digital humanities data, and for the referencing, sharing, and storage of DSEs, have underlined the need for greater data interoperability. The TEI Guidelines have tried to establish standards for encoding transcriptions since 1988. However, because the choice of tags is guided by human interpretation, TEI-XML encoded files are in general not interoperable. One way to fix this problem may be to break down the current all-in-one approach to encoding so that DSEs can be specified instead by a bundle of separate resources that together offer greater interoperability: plain text versions, markup, annotations, and metadata. This would facilitate not only the development of more general software for handling DSEs, but also enable existing programs that already handle these kinds of data to function more efficiently.”

URL : Towards an Interoperable Digital Scholarly Edition

DOI : 10.4000/jtei.979

Publishing without Publishers: a Decentralized Approach to Dissemination, Retrieval, and Archiving of Data

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“Making available and archiving scientific results is for the most part still considered the task of classical publishing companies, despite the fact that classical forms of publishing centered around printed narrative articles no longer seem well-suited in the digital age. In particular, there exist currently no efficient, reliable, and agreed-upon methods for publishing scientific datasets, which have become increasingly important for science. Here we propose to design scientific data publishing as a Web-based bottom-up process, without top-down control of central authorities such as publishing companies. We present a protocol and a server network to decentrally store and archive data in the form of nanopublications, an RDF-based format to represent scientific data with formal semantics. We show how this approach allows researchers to produce, publish, retrieve, address, verify, and recombine datasets and their individual nanopublications in a reliable and trustworthy manner, and we argue that this architecture could be used for the Semantic Web in general. Our evaluation of the current small network shows that this system is efficient and reliable, and we discuss how it could grow to handle the large amounts of structured data that modern science is producing and consuming.”

URL : http://arxiv-web3.library.cornell.edu/abs/1411.2749

The ‘total cost of publication’ in a hybrid open-access environment: Institutional approaches to funding journal article-processing charges in combination with subscriptions

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“As open-access (OA) publishing funded by article-processing charges (APCs) becomes more widely accepted, academic institutions need to be aware of the ‘total cost of publication’, comprising subscription costs plus APCs and additional administration costs. This study analyses data from 23 UK institutions covering the period 2007 to 2014 modelling the total cost of publication (TCP). It shows a clear rise in centrally-managed APC payments from 2012 onwards, with payments projected to increase further. As well as evidencing the growing availability and acceptance of OA publishing, these trends reflect particular UK policy developments and funding arrangements intended to accelerate the move towards OA publishing (‘Gold’ OA). Whilst the mean value of APCs has been relatively stable, there was considerable variation in APC prices paid by institutions since 2007. In particular, ‘hybrid’ subscription/OA journals were consistently more expensive than fully-OA journals. Most APCs were paid to large ‘traditional’ commercial publishers who also received considerable subscription income. New administrative costs reported by institutions varied considerably. The total cost of publication modelling shows that APCs are now a significant part of the TCP for academic institutions, in 2013 already constituting an average of 10% of the TCP (excluding administrative costs).”

URL : http://eprints.whiterose.ac.uk/81227/

Using Crowdsourcing to Evaluate Published Scientific Literature: Methods and Example

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“Systematically evaluating scientific literature is a time consuming endeavor that requires hours of coding and rating. Here, we describe a method to distribute these tasks across a large group through online crowdsourcing. Using Amazon’s Mechanical Turk, crowdsourced workers (microworkers) completed four groups of tasks to evaluate the question, “Do nutrition-obesity studies with conclusions concordant with popular opinion receive more attention in the scientific community than do those that are discordant?” 1) Microworkers who passed a qualification test (19% passed) evaluated abstracts to determine if they were about human studies investigating nutrition and obesity. Agreement between the first two raters’ conclusions was moderate (κ = 0.586), with consensus being reached in 96% of abstracts. 2) Microworkers iteratively synthesized free-text answers describing the studied foods into one coherent term. Approximately 84% of foods were agreed upon, with only 4 and 8% of ratings failing manual review in different steps. 3) Microworkers were asked to rate the perceived obesogenicity of the synthesized food terms. Over 99% of responses were complete and usable, and opinions of the microworkers qualitatively matched the authors’ expert expectations (e.g., sugar-sweetened beverages were thought to cause obesity and fruits and vegetables were thought to prevent obesity). 4) Microworkers extracted citation counts for each paper through Google Scholar. Microworkers reached consensus or unanimous agreement for all successful searches. To answer the example question, data were aggregated and analyzed, and showed no significant association between popular opinion and attention the paper received as measured by Scimago Journal Rank and citation counts. Direct microworker costs totaled $221.75, (estimated cost at minimum wage: $312.61). We discuss important points to consider to ensure good quality control and appropriate pay for microworkers. With good reliability and low cost, crowdsourcing has potential to evaluate published literature in a cost-effective, quick, and reliable manner using existing, easily accessible resources.”

URL : Using Crowdsourcing to Evaluate Published Scientific Literature: Methods and Example

DOI: 10.1371/journal.pone.0100647

Rise of the Rest: The Growing Impact of Non-Elite Journals

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“In this paper, we examine the evolution of the impact of non-elite journals. We attempt to answer two questions. First, what fraction of the top-cited articles are published in non-elite journals and how has this changed over time. Second, what fraction of the total citations are to non-elite journals and how has this changed over time.
We studied citations to articles published in 1995-2013. We computed the 10 most-cited journals and the 1000 most-cited articles each year for all 261 subject categories in Scholar Metrics. We marked the 10 most-cited journals in a category as the elite journals for the category and the rest as non-elite.
There are two conclusions from our study. First, the fraction of top-cited articles published in non-elite journals increased steadily over 1995-2013. While the elite journals still publish a substantial fraction of high-impact articles, many more authors of well-regarded papers in diverse research fields are choosing other venues.
The number of top-1000 papers published in non-elite journals for the representative subject category went from 149 in 1995 to 245 in 2013, a growth of 64%. Looking at broad research areas, 4 out of 9 areas saw at least one-third of the top-cited articles published in non-elite journals in 2013. For 6 out of 9 areas, the fraction of top-cited papers published in non-elite journals for the representative subject category grew by 45% or more.
Second, now that finding and reading relevant articles in non-elite journals is about as easy as finding and reading articles in elite journals, researchers are increasingly building on and citing work published everywhere. Considering citations to all articles, the percentage of citations to articles in non-elite journals went from 27% in 1995 to 47% in 2013. Six out of nine broad areas had at least 50% of citations going to articles published in non-elite journals in 2013.”

URL : http://arxiv-web3.library.cornell.edu/abs/1410.2217

Data and scholarly publishing: the transforming landscape

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“This article sets the scene for the special issue on research data and publishing. Research data – that material commonly accepted by the scholarly community as required evidence for hypotheses and insights, for verification and/or reproducibility of experiments – has become an increasingly critical issue for publishers given recent developments in funders’ mandates, technological advances, policymakers’ interests, and so forth. I outline some of the recent initiatives that are responding to policy directives, particularly Project ODE, and consider how publishers are working with data and integrating their practices with other collaborative efforts. A summary of the new policies, products, and partnerships demonstrates that the onus is now with scholarly publishers to gain an understanding of these developments and how they are affecting fellow key stakeholders within the research communications ecosystem.”

URL : http://dx.doi.org/10.1087/20140502

The big picture: scholarly publishing trends 2014

It is important for journal editors to keep up to date with the changes happening in the international journal environment to ensure that their own publications remain current and meet international expectations. Dramatic changes have taken place in the journals environment during the last two decades, frequently driven by technology but also by increased global participation in scholarly and scientific research and concern about the commercial influence on dissemination of knowledge. Technical solutions have attempted to address the growth in research but have sometimes added to the tsunami of information and increased the need to manage quality.

To this end experiments with the traditional quality control and dissemination systems have been attempted, but news of improvements are frequently overshadowed by alarms about ethical problems. There is particular concern about some of the new publishers who are not adhering to established quality control and ethical practices. Within a potentially fragmenting system, however, there are also emerging collaborative projects helping to knit together the different elements of the publishing landscape to improve quality, linkages and access.

URL : The big picture: scholarly publishing trends 2014

Alternative URL : http://dx.doi.org/10.6087/kcse.2014.1.52