Archives des mots-clés : open access

Repositories for academic products/outputs: Latin American and Chilean visions

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Authors : Leandro Torres, Ricardo Hartley

Open access policies have been progressing since the beginning of this century. Important global initiatives, both public and private, have set the tone for what we understand by open access.

The emergence of tools and web platforms for open access (both legal and illegal) have placed the focus of the discussion on open access to knowledge, both for academics and for the general public, who finance such research through their taxes, particularly in Latin America.

This historically unnoticed discussion must, we believe, be discussed publicly, given the characteristics of the Latin American scientific community, as well as its funding sources.

This article includes an overview of what is meant by open access and describes the origins of the term, both in its philosophical sense and in its practical sense, expressed in the global declarations of Berlin and Bethesda.

It also includes the notion of open access managed (or not) by some reputable institutions in Chile, such as CONICYT (National Commission for Scientific and Technological Research) and higher education institutions reputed nationally, such as the Universdad de Chile and Pontificia Universidad Católica de Chile. Various Latin American initiatives related to open access (Scielo, Redalyc, among others) are described, as well as the presence of Chilean documents in those platforms.

The national institutional repositories are listed, as well as their current status and a discussion about what open access has implied in Latin America and its importance for the replicability of the investigations carried out locally.

Finally, we describe some governmental initiatives (mainly legislative) at the Latin American level and propose some recommendations regarding the promotion and implementation of repositories for the access to scientific data (for access and replication purposes) of the national research.

URL : Repositories for academic products/outputs: Latin American and Chilean visions

DOI : https://doi.org/10.12688/f1000research.19976.1

Does the use of open, non-anonymous peer review in scholarly publishing introduce bias? Evidence from the F1000 post-publication open peer review publishing model

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Authors : Mike Thelwall, Verena Weigert, Liz Allen, Zena Nyakoojo, Eleanor-Rose Papas

This study examines whether there is any evidence of bias in two areas of common critique of open, non-anonymous peer review – and used in the post-publication, peer review system operated by the open-access scholarly publishing platform F1000Research.

First, is there evidence of bias where a reviewer based in a specific country assesses the work of an author also based in the same country? Second, are reviewers influenced by being able to see the comments and know the origins of previous reviewer?

Scrutinising the open peer review comments published on F1000Research, we assess the extent of two frequently cited potential influences on reviewers that may be the result of the transparency offered by a fully attributable, open peer review publishing model: the national affiliations of authors and reviewers, and the ability of reviewers to view previously-published reviewer reports before submitting their own.

The effects of these potential influences were investigated for all first versions of articles published by 8 July 2019 to F1000Research. In 16 out of the 20 countries with the most articles, there was a tendency for reviewers based in the same country to give a more positive review.

The difference was statistically significant in one. Only 3 countries had the reverse tendency. Second, there is no evidence of a conformity bias. When reviewers mentioned a previous review in their peer review report, they were not more likely to give the same overall judgement.

Although reviewers who had longer to potentially read a previously published reviewer reports were slightly less likely to agree with previous reviewer judgements, this could be due to these articles being difficult to judge rather than deliberate non-conformity.

URL : https://arxiv.org/abs/1911.03379

Open Systems Pharmacology community – an open access, open source, open science approach to modeling and simulation in pharmaceutical sciences

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Authors : Jörg Lippert, Rolf Burghaus, Andrea Edginton, Sebastian Frechen, Mats Karlsson, Andreas Kovar, Thorsten Lehr, Peter Milligan, Valerie Nock, Sergej Ramusovic, Matthew Riggs, Stephan Schaller, Jan Schlender, Stephan Schmidt, Michaël Sevestre, Erik Sjögren, Juri Solodenko, Alexander Staab, Donato Teutonico

Systems Pharmacology integrates structural biological and pharmacological knowledge and experimental data enabling dissection of organism and drug properties and providing excellent predictivity.

The development of systems pharmacology models is a significant task requiring massive amounts of background information beyond individual trial data. Qualification of models needs repetitive demonstration of successful predictions.

Open Systems Pharmacology is a community that develops, qualifies and shares professional open source software tools and models in a collaborative open science way.

DOI : https://doi.org/10.1002/psp4.12473

bioRxiv: the preprint server for biology

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Authors : Richard Sever, Ted Roeder, Samantha Hindle, Linda Sussman, Kevin-John Black, Janet Argentine, Wayne Manos, John R. Inglis

The traditional publication process delays dissemination of new research, often by months, sometimes by years. Preprint servers decouple dissemination of research papers from their evaluation and certification by journals, allowing researchers to share work immediately, receive feedback from a much larger audience, and provide evidence of productivity long before formal publication.

Launched in 2013 as a non-profit community service, the bioRxiv server has brought preprint practice to the life sciences and recently posted its 64,000th manuscript.

The server now receives more than four million views per month and hosts papers spanning all areas of biology. Initially dominated by evolutionary biology, genetics/genomics and computational biology, bioRxiv has been increasingly populated by papers in neuroscience, cell and developmental biology, and many other fields.

Changes in journal and funder policies that encourage preprint posting have helped drive adoption, as has the development of bioRxiv technologies that allow authors to transfer papers easily between the server and journals.

A bioRxiv user survey found that 42% of authors post their preprints prior to journal submission whereas 37% post concurrently with journal submission. Authors are motivated by a desire to share work early; they value the feedback they receive, and very rarely experience any negative consequences of preprint posting.

Rapid dissemination via bioRxiv is also encouraging new initiatives that experiment with the peer review process and the development of novel approaches to literature filtering and assessment.

URL : bioRxiv: the preprint server for biology

DOI : https://doi.org/10.1101/833400

Worldwide inequality in access to full textscientific articles: the example ofophthalmology

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Authors : Christophe Boudry, Patricio Alvarez-Muñoz, Ricardo Arencibia-Jorge, Didier Ayena, Niels J. Brouwer, Zia Chaudhuri, Brenda Chawner, Emilienne Epee, Khalil Erraïs, Akbar Fotouhi, Almutez M. Gharaibeh, Dina H. Hassanein, Martina C. Herwig-Carl, Katherine Howard, Dieudonne Kaimbo Wa Kaimbo, Patricia-Ann Laughrea, Fernando A. Lopez, Juan D. Machin-Mastromatteo, Fernando K. Malerbi, Papa Amadou Ndiaye, Nina A. Noor, Josmel Pacheco-Mendoza, Vasilios P. Papastefanou, Mufarriq Shah, Carol L. Shields, Ya Xing Wang, Vasily Yartsev, Frederic Mouriaux

Background

The problem of access to medical information, particularly in low-income countries, has been under discussion for many years. Although a number of developments have occurred in the last decade (e.g., the open access (OA) movement and the website Sci-Hub), everyone agrees that these difficulties still persist very widely, mainly due to the fact that paywalls still limit access to approximately 75% of scholarly documents.

In this study, we compare the accessibility of recent full text articles in the field of ophthalmology in 27 established institutions located worldwide.

Methods

A total of 200 references from articles were retrieved using the PubMed database. Each article was individually checked for OA. Full texts of non-OA (i.e., “paywalled articles”) were examined to determine whether they were available using institutional and Hinari access in each institution studied, using “alternative ways” (i.e., PubMed Central, ResearchGate, Google Scholar, and Online Reprint Request), and using the website Sci-Hub.

Results

The number of full texts of “paywalled articles” available using institutional and Hinari access showed strong heterogeneity, scattered between 0% full texts to 94.8% (mean = 46.8%; SD = 31.5; median = 51.3%).

We found that complementary use of “alternative ways” and Sci-Hub leads to 95.5% of full text “paywalled articles,” and also divides by 14 the average extra costs needed to obtain all full texts on publishers’ websites using pay-per-view.

Conclusions

The scant number of available full text “paywalled articles” in most institutions studied encourages researchers in the field of ophthalmology to use Sci-Hub to search for scientific information.

The scientific community and decision-makers must unite and strengthen their efforts to find solutions to improve access to scientific literature worldwide and avoid an implosion of the scientific publishing model.

This study is not an endorsement for using Sci-Hub. The authors, their institutions, and publishers accept no responsibility on behalf of readers.

URL : Worldwide inequality in access to full textscientific articles: the example ofophthalmology

DOI : https://doi.org/10.7717/peerj.7850

Can Accessibility Liberate The “Lost Ark” of Scholarly Work?: University Library Institutional Repositories Are “Places of Public Accommodation”

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Authors : Raizel Liebler, Gregory Cunningham

For any body of knowledge – an ark of power or a corpus of scholarship – to be studied and used by people, it needs to be accessible to those seeking information. Universities, through their libraries, now aim to make more of the scholarship produced available for free to all through institutional repositories.

However, the goal of being truly open for an institutional repository is more than the traditional definition of open access. It also means openness in a more general sense. Creating a scholarship-based online space also needs to take into consideration potential barriers for people with disabilities.

This article addresses the interaction between the Americans with Disabilities Act (ADA) and university academic library based institutional repositories. This article concludes that institutional repositories have an obligation to comply with the ADA to make scholarly works available to potential users with disabilities.

For managers of institutional repositories, following the law is an opportunity to make scholarship even more widely available. University open access institutional repositories need to be accessible to existing and potential disabled users. However, there are no specific rules that university institutional repositories must follow to be compliant with the ADA’s “public accommodation” standard.

Accessibility is a changeable, moveable wall, consistently and constantly needing to be additionally inclusive of more – more technology and more users, regardless of disability or limitations.

Institutional repositories should not become the crated Ark of the Covenant with their secrets locked inside; instead, they should be as open as possible to all, sharing the scholarship inside.

URL : https://repository.jmls.edu/lawreview/vol52/iss2/2/

Open Access — Towards a non-normative and systematic understanding

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Authors : Niels Taubert, Anne Hobert, Nicolas Fraser, Najko Jahn, Elham Iravani

The term Open Access not only describes a certain model of scholarly publishing — namely in digital format freely accessible to readers — but often also implies that free availability of research results is desirable, and hence has a normative character.

Together with the large variety of presently used definitions of different Open Access types, this normativity hinders a systematic investigation of the development of open availability of scholarly literature.

In this paper, we propose a non-normative definition of Open Access and its usage as a neutral, descriptive term in bibliometric studies and research on science.

To this end, we first specify what normative figures are commonly associated with the term Open Access and then develop a neutral definition. We further identify distinguishing characteristics of openly accessible literature, called dimensions, and derive a classification scheme into Open Access categories based on these dimensions.

Additionally, we present an operationalisation method to assign scientific publications to the respective categories in practice. Here, we describe useful data sources, which can be employed to gather the information needed for the classification of scholarly works according to the presented classification scheme.

URL : https://arxiv.org/abs/1910.11568