Archives des mots-clés : open science

The Peer Reviewers’ Openness Initiative: incentivizing open research practices through peer review

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Openness is one of the central values of science. Open scientific practices such as sharing data, materials and analysis scripts alongside published articles have many benefits, including easier replication and extension studies, increased availability of data for theory-building and meta-analysis, and increased possibility of review and collaboration even after a paper has been published. Although modern information technology makes sharing easier than ever before, uptake of open practices had been slow. We suggest this might be in part due to a social dilemma arising from misaligned incentives and propose a specific, concrete mechanism—reviewers withholding comprehensive review—to achieve the goal of creating the expectation of open practices as a matter of scientific principle.

URL : The Peer Reviewers’ Openness Initiative: incentivizing open research practices through peer review

DOI: 10.1098/rsos.150547

Reproducible Research Practices and Transparency across the Biomedical Literature

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There is a growing movement to encourage reproducibility and transparency practices in the scientific community, including public access to raw data and protocols, the conduct of replication studies, systematic integration of evidence in systematic reviews, and the documentation of funding and potential conflicts of interest.

In this survey, we assessed the current status of reproducibility and transparency addressing these indicators in a random sample of 441 biomedical journal articles published in 2000–2014. Only one study provided a full protocol and none made all raw data directly available. Replication studies were rare (n = 4), and only 16 studies had their data included in a subsequent systematic review or meta-analysis. The majority of studies did not mention anything about funding or conflicts of interest.

The percentage of articles with no statement of conflict decreased substantially between 2000 and 2014 (94.4% in 2000 to 34.6% in 2014); the percentage of articles reporting statements of conflicts (0% in 2000, 15.4% in 2014) or no conflicts (5.6% in 2000, 50.0% in 2014) increased.

Articles published in journals in the clinical medicine category versus other fields were almost twice as likely to not include any information on funding and to have private funding. This study provides baseline data to compare future progress in improving these indicators in the scientific literature.

URL : Reproducible Research Practices and Transparency across the Biomedical Literature

DOI : 10.1371/journal.pbio.1002333

Enabling Open Science: Wikidata for Research

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Wiki4R will create an innovative virtual research environment (VRE) for Open Science at scale, engaging both professional researchers and citizen data scientists in new and potentially transformative forms of collaboration. It is based on the realizations that (1) the structured parts of the Web itself can be regarded as a VRE, (2) such environments depend on communities, (3) closed environments are limited in their capacity to nurture thriving communities.

Wiki4R will therefore integrate Wikidata, the multilingual semantic backbone behind Wikipedia, into existing research processes to enable transdisciplinary research and reduce fragmentation of research in and outside Europe. By establishing a central shared information node, research data can be linked and annotated into knowledge. Despite occasional uses of Wikipedia or Wikidata in research, significant barriers to broader adoption in the sciences or digital humanities exist, including lack of integration into existing research processes and inadequate handling of provenances.

The proposed actions include providing best practices and tools for semantic mapping, adoption of citation and author identifiers, interoperability layers for integration with existing research environments, and the development of policies for information quality and interchange. The effectiveness of the actions will be tested in pilot use cases.

Unforeseen barriers will be investigated and documented. We will promote the adoption of Wiki4R by making it easy to use and integrate, demonstrate the applicability in selected research domains, and provide diverse training opportunities.

Wiki4R leverages the expertise gained in Europe through the Wikidata and DBpedia projects to further strengthen the established virtual community of 14000 people. As a result of increased interaction between professional science and citizens, it will provide an improved basis for Responsible Research and Innovation and Open Science in the European Research Area.

URL : Enabling Open Science: Wikidata for Research

Alternative location : http://rio.pensoft.net/articles.php?id=7573

The open research value proposition: How sharing can help researchers succeed

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Open access, open data, open source, and other open scholarship practices are growing in necessity and popularity, rapidly becoming part of the integral workflow of researchers. However, widespread adoption of many of these practices has not yet been achieved. Understandably, researchers have concerns as to how sharing their work will affect their careers. Some of these concerns stem from a lack of awareness about the career benefits associated with open research.

Herein, we review literature on the open citation advantage, media attention for publicly available research, collaborative possibilities, and special funding opportunities to show how open practices can give researchers a competitive advantage.

URL : The open research value proposition: How sharing can help researchers succeed

Alternative location : https://figshare.com/articles/The_open_research_value_proposition_How_sharing_can_help_researchers_succeed/1619902

Making Open Science a reality

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Science is the mother of the digital age. And yet, twenty-two years after CERN placed the World Wide Web software in the public domain, effectively creating the open internet, science itself has struggled not only to “go digital” but also to “go open”. This report, Making open science a reality reviews the progress in OECD countries in making the results of publicly funded research, namely scientific publications and research data openly accessible to researchers and innovators alike.

The report i) reviews the policy rationale behind open science and open data; ii) discusses and presents evidence on the impacts of policies to promote open science and open data; iii) explores the legal barriers and solutions to greater access to research data; iv) provides a description of the key actors involved in open science and their roles; and finally v) assesses progress in OECD and selected non-member countries based a survey of recent policy trends.

URL : http://www.oecd-ilibrary.org/science-and-technology/making-open-science-a-reality_5jrs2f963zs1-en

Open Science in Poland 2014 : A Diagnosis

Statut

The process of producing and distributing scientific knowledge has been undergoing significant changes recently, termed collectively as “opening” of science. The changes were begun with the development of new technologies, but their dynamics was also influenced by the features of scholary communication and the social role of scientific research, as well as its institutional and political context. The basic aspect of Open Science is Open Access to scientific literature and data, but openness can also concern other elements of science, such
as conducting, evaluating, disseminating and using research and its findings.

The open models were initially implemented locally, as a “grassroot” movement, but with time a need arose for a more systematic approach, especially in strategies and policies of institutions responsible for research and funding, both state-owned and international bodies. In Poland such strategies and policies are yet to be developed, and the basic condition to be fulfilled is establishing a diagnosis of the current state of openness in the Polish science sector. The present report is an attempt to draw such a diagnosis.

URL : https://microblogging.infodocs.eu/wp-content/uploads/2015/08/Szprot2015.pdf

Alternative location : http://pon.edu.pl/index.php/nasze-publikacje?pubid=16

Fair Shares and Sharing Fairly: A Survey of Public Views on Open Science, Informed Consent and Participatory Research in Biobanking

Statut

“Context

Biobanks are important resources which enable large-scale genomic research with human samples and data, raising significant ethical concerns about how participants’ information is managed and shared. Three previous studies of the Canadian public’s opinion about these topics have been conducted. Building on those results, an online survey representing the first study of public perceptions about biobanking spanning all Canadian provinces was conducted. Specifically, this study examined qualitative views about biobank objectives, governance structure, control and ownership of samples and data, benefit sharing, consent practices and data sharing norms, as well as additional questions and ethical concerns expressed by the public.

Results

Over half the respondents preferred to give a one-time general consent for the future sharing of their samples among researchers. Most expressed willingness for their data to be shared with the international scientific community rather than used by one or more Canadian institutions. Whereas more respondents indicated a preference for one-time general consent than any other model of consent, they constituted less than half of the total responses, revealing a lack of consensus among survey respondents regarding this question. Respondents identified biobank objectives, governance structure and accountability as the most important information to provide participants.

Respondents’ concerns about biobanking generally centred around the control and ownership of biological samples and data, especially with respect to potential misuse by insurers, the government and other third parties. Although almost half the respondents suggested that these should be managed by the researchers’ institutions, results indicate that the public is interested in being well-informed about these projects and suggest the importance of increased involvement from participants. In conclusion, the study discusses the viability of several proposed models for informed consent, including e-governance, independent trustees and the use of exclusion clauses, in the context of these new findings about the views of the Canadian public.”

URL : Fair Shares and Sharing Fairly: A Survey of Public Views on Open Science, Informed Consent and Participatory Research in Biobanking

DOI : 10.1371/journal.pone.0129893