Fostering Data Openness by Enabling Science: A Proposal for Micro-Funding

Author: Brian Rappert

In recent years, the promotion of data sharing has come with the recognition that not all scientists around the world are equally placed to partake in such activities. Notably, those within developing countries are sometimes regarded as experiencing hardware infrastructure challenges and data management skill shortages.

Proposed remedies often focus on the provision of information and communication technology as well as enhanced data management training. Building on prior empirical social research undertaken in sub-Sahara Africa, this article provides a complementary but alternative proposal; namely, fostering data openness by enabling research.

Towards this end, the underlying rationale is outlined for a ‘bottom-up’ system of research support that addresses the day-to-day demands in low-resourced environments. This approach draws on lessons from development financial assistance programs in recent decades.

In doing so, this article provides an initial framework for science funding that call for holding together concerns for ensuring research can be undertaken in low-resourced laboratory environments with concerns about the data generated in such settings can be shared.

URL : Fostering Data Openness by Enabling Science: A Proposal for Micro-Funding

DOI : http://doi.org/10.5334/dsj-2017-044

Ethics approval in applications for open-access clinical trial data: An analysis of researcher statements to clinicalstudydatarequest.com

Authors : Derek So, Bartha M. Knoppers

Although there are a number of online platforms for patient-level clinical trial data sharing from industry sponsors, they are not very harmonized regarding the role of local ethics approval in the research proposal review process.

The first and largest of these platforms is ClinicalStudyDataRequest.com (CSDR), which includes over three thousand trials from thirteen sponsors including GlaxoSmithKline, Novartis, Roche, Sanofi, and Bayer. CSDR asks applicants to state whether they have received ethics approval for their research proposal, but in most cases does not require that they submit evidence of approval.

However, the website does require that applicants without ethical approval state the reason it was not required. In order to examine the perspectives of researchers on this topic, we coded every response to that question received by CSDR between June 2014 and February 2017.

Of 111 applicants who stated they were exempt from ethics approval, 63% mentioned de-identification, 57% mentioned the use of existing data, 33% referred to local or jurisdictional regulations, and 20% referred to the approvals obtained by the original study.

We conclude by examining the experience of CSDR within the broader context of the access mechanisms and policies currently being used by other data sharing platforms, and discuss how our findings might be used to help clinical trial data providers design clear and informative access documents.

URL : Ethics approval in applications for open-access clinical trial data: An analysis of researcher statements to clinicalstudydatarequest.com

DOI : https://doi.org/10.1371/journal.pone.0184491

Effectiveness of Anonymization in Double-Blind Review

Authors : Claire Le Goues, Yuriy Brun, Sven Apel, Emery Berger, Sarfraz Khurshid, Yannis Smaragdakis

Double-blind review relies on the authors’ ability and willingness to effectively anonymize their submissions. We explore anonymization effectiveness at ASE 2016, OOPSLA 2016, and PLDI 2016 by asking reviewers if they can guess author identities.

We find that 74%-90% of reviews contain no correct guess and that reviewers who self-identify as experts on a paper’s topic are more likely to attempt to guess, but no more likely to guess correctly.

We present our findings, summarize the PC chairs’ comments about administering double-blind review, discuss the advantages and disadvantages of revealing author identities part of the way through the process, and conclude by advocating for the continued use of double-blind review.

URL : https://arxiv.org/abs/1709.01609

We’ve failed: Pirate black open access is trumping green and gold and we must change our approach

Author : Toby Green

Key points

Sci-Hub has made nearly all articles freely available using a black open access model, leaving green and gold models in its dust.

 Why, after 20 years of effort, have green and gold open access not achieved more? Do we need ‘tae think again’?

 If human nature is to postpone change for as long as possible, are green and gold open access fundamentally flawed?

 Open and closed publishing models depend on bundle pricing paid by one stakeholder, the others getting a free ride. Is unbundling a fairer model?

If publishers changed course and unbundled their product, would this open a legal, fairer route to 100% open access and see off the pirates?

URL : http://onlinelibrary.wiley.com/doi/10.1002/leap.1116/full

Open access megajournals: The publisher perspective (Part 2: Operational realities)

Authors : Simon Wakeling ,Valérie Spezi, Jenny Fry, Claire Creaser, Stephen Pinfield, Peter Willett

This paper is the second of two Learned Publishing articles in which we report the results of a series of interviews, with senior publishers and editors exploring open access megajournals (OAMJs).

Megajournals (of which PLoS One is the best known example) represent a relatively new approach to scholarly communication and can be characterized as large, broad-scope, open access journals, which take an innovative approach to peer review, basing acceptance decisions solely on the technical or scientific soundness of the article. B

ased on interviews with 31 publishers and editors, this paper reports the perceived cultural, operational, and technical challenges associated with launching, growing, and maintaining a megajournal.

We find that overcoming these challenges while delivering the societal benefits associated with OAMJs is seen to require significant investment in people and systems, as well as an ongoing commitment to the model.

URL : Open access megajournals: The publisher perspective (Part 2: Operational realities)

Alternative location : http://onlinelibrary.wiley.com/doi/10.1002/leap.1118/full

 

Open access megajournals: The publisher perspective (Part 1: Motivations)

Authors : Simon Wakeling ,Valérie Spezi , Jenny Fry, Claire Creaser, Stephen Pinfield, Peter Willett

This paper is the first of two Learned Publishing articles in which we report the results of a series of interviews with senior publishers and editors exploring open access megajournals (OAMJs).

Megajournals (of which PLoS One is the best known example) represent a relatively new approach to scholarly communication and can be characterized as large, broad-scope, open access journals that take an innovative approach to peer review, basing acceptance decisions solely on the technical or scientific soundness of the article.

This model is often said to support the broader goals of the open science movement. Based on in-depth interviews with 31 publishers and editors representing 16 different organizations (10 of which publish a megajournal), this paper reports how the term ‘megajournal’ is understood and publishers’ rationale and motivations for launching (or not launching) an OAMJ.

We find that while there is general agreement on the common characteristics of megajournals, there is not yet a consensus on their relative importance. We also find seven motivating factors that were said to drive the launch of an OAMJ and link each of these factors to potential societal and business benefits.

These results suggest that the often polarized debate surrounding OAMJs is a consequence of the extent to which observers perceive publishers to be motivated by these societal or business benefits.

URL : Open access megajournals: The publisher perspective (Part 1: Motivations)

Alternative location : http://onlinelibrary.wiley.com/doi/10.1002/leap.1117/full

 

 

A prospective study on an innovative online forum for peer reviewing of surgical science

Authors : Martin Almquist, Regula S. von Allmen, Dan Carradice, Steven J. Oosterling, Kirsty McFarlane, Bas Wijnhoven

Background

Peer review is important to the scientific process. However, the present system has been criticised and accused of bias, lack of transparency, failure to detect significant breakthrough and error. At the British Journal of Surgery (BJS), after surveying authors’ and reviewers’ opinions on peer review, we piloted an open online forum with the aim of improving the peer review process.

Methods

In December 2014, a web-based survey assessing attitudes towards open online review was sent to reviewers with a BJS account in Scholar One. From April to June 2015, authors were invited to allow their manuscripts to undergo online peer review in addition to the standard peer review process.

The quality of each review was evaluated by editors and editorial assistants using a validated instrument based on a Likert scale.

Results

The survey was sent to 6635 reviewers. In all, 1454 (21.9%) responded. Support for online peer review was strong, with only 10% stating that they would not subject their manuscripts to online peer review. The most prevalent concern was about intellectual property, being highlighted in 118 of 284 comments (41.5%).

Out of 265 eligible manuscripts, 110 were included in the online peer review trial. Around 7000 potential reviewers were invited to review each manuscript.

In all, 44 of 110 manuscripts (40%) received 100 reviews from 59 reviewers, alongside 115 conventional reviews. The quality of the open forum reviews was lower than for conventional reviews (2.13 (± 0.75) versus 2.84 (± 0.71), P<0.001).

Conclusion

Open online peer review is feasible in this setting, but it attracts few reviews, of lower quality than conventional peer reviews.

URL : A prospective study on an innovative online forum for peer reviewing of surgical science

DOI : https://doi.org/10.1371/journal.pone.0179031