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TEI Models for the Publication of Social Sciences and Humanities Journals: Opportunities, Challenges, and First Steps Toward a Standardized Workflow

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Authors : Anne Baillot, Julie Giovacchini

The TEI Guidelines are developed and curated by a community whose main purpose is to standardize the encoding of primary sources relevant for humanities research and teaching. But other communities are also working with TEI-based publication formats.

The first goal of this paper is to raise awareness of the importance of TEI-based scholarly publishing as we know it today.

The second goal is to contribute to a reflection on the development of a TEI customization that would cover the whole authoring-reviewing-publishing workflow and guarantee archiving options that are as solid for journal publications as what we now have for primary sources published in TEI.

URL : TEI Models for the Publication of Social Sciences and Humanities Journals: Opportunities, Challenges, and First Steps Toward a Standardized Workflow

DOI : https://doi.org/10.4000/jtei.3419

Status, use and impact of sharing individual participant data from clinical trials: a scoping review

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Authors : Christian Ohmann, David Moher, Maximilian Siebert, Edith Motschall, Florian Naudet

Objectives

To explore the impact of data-sharing initiatives on the intent to share data, on actual data sharing, on the use of shared data and on research output and impact of shared data.

Eligibility criteria

All studies investigating data-sharing practices for individual participant data (IPD) from clinical trials.

Sources of evidence

We searched the Medline database, the Cochrane Library, the Science Citation Index Expanded and the Social Sciences Citation Index via Web of Science, and preprints and proceedings of the International Congress on Peer Review and Scientific Publication.

In addition, we inspected major clinical trial data-sharing platforms, contacted major journals/publishers, editorial groups and some funders.

Charting methods

Two reviewers independently extracted information on methods and results from resources identified using a standardised questionnaire. A map of the extracted data was constructed and accompanied by a narrative summary for each outcome domain.

Results

93 studies identified in the literature search (published between 2001 and 2020, median: 2018) and 5 from additional information sources were included in the scoping review. Most studies were descriptive and focused on early phases of the data-sharing process. While the willingness to share IPD from clinical trials is extremely high, actual data-sharing rates are suboptimal.

A survey of journal data suggests poor to moderate enforcement of the policies by publishers. Metrics provided by platforms suggest that a large majority of data remains unrequested. When requested, the purpose of the reuse is more often secondary analyses and meta-analyses, rarely re-analyses. Finally, studies focused on the real impact of data-sharing were rare and used surrogates such as citation metrics.

Conclusions

There is currently a gap in the evidence base for the impact of IPD sharing, which entails uncertainties in the implementation of current data-sharing policies. High level evidence is needed to assess whether the value of medical research increases with data-sharing practices.

URL : Status, use and impact of sharing individual participant data from clinical trials: a scoping review

Original location : https://bmjopen.bmj.com/content/11/8/e049228

Improving evidence-based practice through preregistration of applied research: Barriers and recommendations

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Authors : Thomas Rhys Evans, Peter Branney, Andrew Clements, Ella Hatton

Preregistration is the practice of publicly publishing plans on central components of the research process before access to, or collection, of data. Within the context of the replication crisis, open science practices like preregistration have been pivotal in facilitating greater transparency in research.

However, such practices have been applied nearly exclusively to basic academic research, with rare consideration of the relevance to applied and consultancy-based research. This is particularly problematic as such research is typically reported with very low levels of transparency and accountability despite being disseminated as influential gray literature to inform practice.

Evidence-based practice is best served by an appreciation of multiple sources of quality evidence, thus the current review considers the potential of preregistration to improve both the accessibility and credibility of applied research toward more rigorous evidence-based practice.

The current three-part review outlines, first, the opportunities of preregistration for applied research, and second, three barriers – practical challenges, stakeholder roles, and the suitability of preregistration.

Last, this review makes four recommendations to overcome these barriers and maximize the opportunities of preregistration for academics, industry, and the structures they are held within – changes to preregistration templates, new types of templates, education and training, and recognition and structural changes.

URL : Improving evidence-based practice through preregistration of applied research: Barriers and recommendations

DOI : https://doi.org/10.1080/08989621.2021.1969233

Knowledge and Attitudes Among Life Scientists Toward Reproducibility Within Journal Articles: A Research Survey

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Authors : Evanthia Kaimaklioti Samota, Robert P. Davey

We constructed a survey to understand how authors and scientists view the issues around reproducibility, focusing on interactive elements such as interactive figures embedded within online publications, as a solution for enabling the reproducibility of experiments.

We report the views of 251 researchers, comprising authors who have published in eLIFE Sciences, and those who work at the Norwich Biosciences Institutes (NBI). The survey also outlines to what extent researchers are occupied with reproducing experiments themselves. Currently, there is an increasing range of tools that attempt to address the production of reproducible research by making code, data, and analyses available to the community for reuse. We wanted to collect information about attitudes around the consumer end of the spectrum, where life scientists interact with research outputs to interpret scientific results.

Static plots and figures within articles are a central part of this interpretation, and therefore we asked respondents to consider various features for an interactive figure within a research article that would allow them to better understand and reproduce a published analysis.

The majority (91%) of respondents reported that when authors describe their research methodology (methods and analyses) in detail, published research can become more reproducible. The respondents believe that having interactive figures in published papers is a beneficial element to themselves, the papers they read as well as to their readers.

Whilst interactive figures are one potential solution for consuming the results of research more effectively to enable reproducibility, we also review the equally pressing technical and cultural demands on researchers that need to be addressed to achieve greater success in reproducibility in the life sciences.

URL : Knowledge and Attitudes Among Life Scientists Toward Reproducibility Within Journal Articles: A Research Survey

DOI : https://doi.org/10.3389/frma.2021.678554

Open research data repositories: Practices, norms, and metadata for sharing images

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Authors : Karin Hansson, Anna Dahlgren

Open research data repositories are promoted as one of the cornerstones in the open research paradigm, promoting collaboration, interoperability, and large-scale sharing and reuse. There is, however, a lack of research investigating what these sharing platforms actually share and a more critical interface analysis of the norms and practices embedded in this datafication of academic practice is needed.

This article takes image data sharing in the humanities as a case study for investigating the possibilities and constraints in 5 open research data repositories. By analyzing the visual and textual content of the interface along with the technical means for metadata, the study shows how the platforms are differentiated in terms of signifiers of research paradigms, but that beneath the rhetoric of the interface, they are designed in a similar way, which does not correspond well with the image researchers’ need for detailed metadata.

Combined with the problem of copyright limitations, these data-sharing tools are simply not sophisticated enough when it comes to sharing and reusing images. The result also corresponds with previous research showing that these tools are used not so much for sharing research data, but more for promoting researcher personas.

URL : Open research data repositories: Practices, norms, and metadata for sharing images

DOI : https://doi.org/10.1002/asi.24571

Who are the users of national open access journals? The case of the Finnish Journal.fi platform

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Authors : Janne Pölönen, Sami Syrjämäki, Antti-Jussi Nygård, Björn Hammarfelt

In this paper we study the diversity of users of open access articles on the Finnish Journal.fi platform. This platform hosts around hundred open access journals from Finland publishing in different fields and mainly Finnish and English languages.

The study is based on an online survey, conducted on 48 journals during Spring 2020, in which visitors were asked to indicate their background and allow their location and download behaviour be tracked. Among 668 survey participants, the two largest groups were students (40%) and researchers (36%), followed by private citizens (8%), other experts (7%) and teachers (5%).

Other identified user categories include journalists, civil servants, entrepreneurs and politicians. While new publications attract a considerable share of the views, there is still a relatively large interest, especially among students, in older materials.

Our findings indicate that Finnish language publications are particularly important for reaching students, citizens, experts and politicians. Thus, open access to publications in national languages is vital for the local relevance and outreach of research.

URL : Who are the users of national open access journals? The case of the Finnish Journal.fi platform

DOI : https://doi.org/10.1002/leap.1405

Introducing a data availability policy for journals at IOP Publishing: Measuring the impact on authors and editorial teams

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Authors : Jade Holt, Andrew Walker, Phill Jones

As the open research movement continues to gather pace, a number of publishers, funders, and institutions are mandating the sharing of underlying research data. At the same time, concerns about introducing extra quality control steps around data availability statements (DAS) are driving a discussion about the best way to make data more open without slowing down publication.

This article describes a pilot project to introduce a new Open Data policy to three IOP Publishing (IOPP) journals as part of IOPP’s commitment to increasing transparency and support for open science.

An investigation was undertaken using an automated workflow monitoring tool to understand the impact of this change on authors and the editorial staff. Changes in revised submission processing times and how often manuscripts were returned to the author were measured.

An overall increase in the time editorial staff spent processing manuscripts was found as well as an increase in the number of times manuscripts were returned to authors. Detailed analysis shows that manuscripts in which authors claim in the DAS to have included data within the manuscript were the most strongly affected. Steps to mitigate the effects through improved author communication were found to be effective.

URL : Introducing a data availability policy for journals at IOP Publishing: Measuring the impact on authors and editorial teams

DOI : https://doi.org/10.1002/leap.1386