The effect of bioRxiv preprints on citations and altmetrics

Authors : Nicholas Fraser, Fakhri Momeni, Philipp Mayr, Isabella Peters

A potential motivation for scientists to deposit their scientific work as preprints is to enhance its citation or social impact, an effect which has been empirically observed for preprints in physics, astronomy and mathematics deposited to arXiv. In this study we assessed the citation and altmetric advantage of bioRxiv, a preprint server for the biological sciences.

We retrieved metadata of all bioRxiv preprints deposited between November 2013 and December 2017, and matched them to articles that were subsequently published in peer-reviewed journals. Citation data from Scopus and altmetric data from Altmetric.com were used to compare citation and online sharing behaviour of bioRxiv preprints, their related journal articles, and non-deposited articles published in the same journals.

We found that bioRxiv-deposited journal articles received a sizeable citation and altmetric advantage over non-deposited articles. Regression analysis reveals that this advantage is not explained by multiple explanatory variables related to the article and its authorship.

bioRxiv preprints themselves are being directly cited in journal articles, regardless of whether the preprint has been subsequently published in a journal. bioRxiv preprints are also shared widely on Twitter and in blogs, but remain relatively scarce in mainstream media and Wikipedia articles, in comparison to peer-reviewed journal articles.

URL : https://www.biorxiv.org/content/10.1101/673665v1

From closed to open access: A case study of flipped journals

Authors : Fakhri Momeni, Nicholas Fraser, Isabella Peters, Philipp Mayr

In recent years, increased stakeholder pressure to transition research to Open Access has led to many journals “flipping” from a toll access to an open access publishing model. Changing the publishing model can influence the decision of authors to submit their papers to a journal, and increased article accessibility may influence citation behaviour.

The aim of this paper is to show changes in the number of published articles and citations after the flipping of a journal. We analysed a set of 171 journals in the Web of Science (WoS) which flipped to open access.

In addition to comparing the number of articles, average relative citation (ARC) and normalized impact factor (IF) are applied, respectively, as bibliometric indicators at the article and journal level, to trace the transformation of flipped journals covered.

Our results show that flipping mostly has had positive effects on journal’s IF. But it has had no obvious citation advantage for the articles. We also see a decline in the number of published articles after flipping.

We can conclude that flipping to open access can improve the performance of journals, despite decreasing the tendency of authors to submit their articles and no better citation advantages for articles.

URL : https://arxiv.org/abs/1903.11682

Highly cited references in PLOS ONE and their in-text usage over time

Authors : Wolfgang Otto, Behnam Ghavimi, Philipp Mayr, Rajesh Piryani, Vivek Kumar Singh

In this article, we describe highly cited publications in a PLOS ONE full-text corpus. For these publications, we analyse the citation contexts concerning their position in the text and their age at the time of citing.

By selecting the perspective of highly cited papers, we can distinguish them based on the context during citation even if we do not have any other information source or metrics.

We describe the top cited references based on how, when and in which context they are cited. The focus of this study is on a time perspective to explain the nature of the reception of highly cited papers.

We have found that these references are distinguishable by the IMRaD sections of their citation. And further, we can show that the section usage of highly cited papers is time-dependent.

The longer the citation interval, the higher the probability that a reference is cited in a method section.

URL : https://arxiv.org/abs/1903.11693

Automatically Annotating Articles Towards Opening and Reusing Transparent Peer Reviews

Authors : Afshin Sadeghi, Sarven Capadisli, Johannes Wilm, Christoph Lange, Philipp Mayr

An increasing number of scientific publications are created in open and transparent peer review models: a submission is published first, and then reviewers are invited, or a submission is reviewed in a closed environment but then these reviews are published with the final article, or combinations of these.

Reasons for open peer review include giving better credit to reviewers and enabling readers to better appraise the quality of a publication. In most cases, the full, unstructured text of an open review is published next to the full, unstructured text of the article reviewed.

This approach prevents human readers from getting a quick impression of the quality of parts of an article, and it does not easily support secondary exploitation, e.g., for scientometrics on reviews.

While document formats have been proposed for publishing structured articles including reviews, integrated tool support for entire open peer review workflows resulting in such documents is still scarce.

We present AR-Annotator, the Automatic Article and Review Annotator which employs a semantic information model of an article and its reviews, using semantic markup and unique identifiers for all entities of interest.

The fine-grained article structure is not only exposed to authors and reviewers but also preserved in the published version. We publish articles and their reviews in a Linked Data representation and thus maximize their reusability by third-party applications.

We demonstrate this reusability by running quality-related queries against the structured representation of articles and their reviews.

URL : https://arxiv.org/abs/1812.01027

Decentralized creation of academic documents using a Network Attached Storage (NAS) server

Authors : Johannes Wilm, Afshin Sadeghi, Christoph Lange, Philipp Mayr

Scholarly document creation continues to face various obstacles. Scholarly text production requires more complex word processors than other forms of texts because of the complex structures of citations, formulas and figures.

The need for peer review, often single-blind or double-blind, creates needs for document management that other texts do not require. Additionally, the need for collaborative editing, security and strict document access rules means that many existing word processors are imperfect solutions for academics.

Nevertheless, most papers continue to be written using Microsoft Word (Sadeghi et al. 2017).

We here analyze some of the problems with existing academic solutions and then present an argument why we believe that running an open source academic writing solution for academic purposes, such as Fidus Writer, on a Network Attached Storage (NAS) server could be a viable alternative.

URL : https://arxiv.org/abs/1706.04185

Opening Scholarly Communication in Social Sciences by Connecting Collaborative Authoring to Peer Review

Authors : Afshin Sadeghi, Johannes Wilm, Philipp Mayr, Christoph Lange

The objective of the OSCOSS research project on “Opening Scholarly Communication in the Social Sciences” is to build a coherent collaboration environment that facilitates scholarly communication workflows of social scientists in the roles of authors, reviewers, editors and readers. This paper presents the implementation of the core of this environment: the integration of the Fidus Writer academic word processor with the Open Journal Systems (OJS) submission and review management system.

URL : https://arxiv.org/abs/1703.04428