Tag Archives: scientific communication

Les revues de sciences humaines et sociales en France: libre accès et audience

« La Commission européenne a émis le 17 juillet 2012 une recommandation en faveur du libre accès aux résultats de la recherche financée sur fonds publics.

La question posée aux politiques publiques est celle de la durée pendant laquelle l’accès peut être payant avant le passage à la gratuité de l’article. Il s’agit donc de prendre la mesure des gains et des coûts d’une telle politique de libre accès pour déterminer quel serait le délai optimal d’embargo. »

URL : http://www.ipp.eu/wp-content/uploads/2015/07/revues-shs-rapport-IPP-juillet2015.pdf


24 juillet 2015 · 14 h 25 min

Accelerating Scientific Publication in Biology

« Scientific publications enable results and ideas to be transmitted throughout the scientific community. The number and type of journal publications also have become the primary criteria used in evaluating career advancement. Our analysis suggests that publication practices have changed considerably in the life sciences over the past thirty years. Considerably more experimental data is now required for publication, and the average time required for graduate students to publish their first paper has increased and is approaching the desirable duration of Ph.D. training.

Since publication is generally a requirement for career progression, schemes to reduce the time of graduate student and postdoctoral training may be difficult to implement without also considering new mechanisms for accelerating communication of their work. The increasing time to publication also delays potential catalytic effects that ensue when many scientists have access to new information. The time has come for the life scientists, funding agencies, and publishers to discuss how to communicate new findings in a way that best serves the interests of the public and scientific community. »

URL : http://biorxiv.org/content/early/2015/07/11/022368

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21 juillet 2015 · 14 h 05 min

Mining and Analyzing the Future Works in Scientific Articles

« Future works in scientific articles are valuable for researchers and they can guide researchers to new research directions or ideas. In this paper, we mine the future works in scientific articles in order to 1) provide an insight for future work analysis and 2) facilitate researchers to search and browse future works in a research area.

First, we study the problem of future work extraction and propose a regular expression based method to address the problem. Second, we define four different categories for the future works by observing the data and investigate the multi-class future work classification problem. Third, we apply the extraction method and the classification model to a paper dataset in the computer science field and conduct a further analysis of the future works.

Finally, we design a prototype system to search and demonstrate the future works mined from the scientific papers. Our evaluation results show that our extraction method can get high precision and recall values and our classification model can also get good results and it outperforms several baseline models. Further analysis of the future work sentences also indicates interesting results. »

URL : http://arxiv.org/abs/1507.02140

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18 juillet 2015 · 11 h 30 min

From Peer-Reviewed to Peer-Reproduced in Scholarly Publishing: The Complementary Roles of Data Models and Workflows in Bioinformatics

« Motivation

Reproducing the results from a scientific paper can be challenging due to the absence of data and the computational tools required for their analysis. In addition, details relating to the procedures used to obtain the published results can be difficult to discern due to the use of natural language when reporting how experiments have been performed. The Investigation/Study/Assay (ISA), Nanopublications (NP), and Research Objects (RO) models are conceptual data modelling frameworks that can structure such information from scientific papers. Computational workflow platforms can also be used to reproduce analyses of data in a principled manner. We assessed the extent by which ISA, NP, and RO models, together with the Galaxy workflow system, can capture the experimental processes and reproduce the findings of a previously published paper reporting on the development of SOAPdenovo2, a de novo genome assembler.


Executable workflows were developed using Galaxy, which reproduced results that were consistent with the published findings. A structured representation of the information in the SOAPdenovo2 paper was produced by combining the use of ISA, NP, and RO models. By structuring the information in the published paper using these data and scientific workflow modelling frameworks, it was possible to explicitly declare elements of experimental design, variables, and findings. The models served as guides in the curation of scientific information and this led to the identification of inconsistencies in the original published paper, thereby allowing its authors to publish corrections in the form of an errata. »

URL : From Peer-Reviewed to Peer-Reproduced in Scholarly Publishing: The Complementary Roles of Data Models and Workflows in Bioinformatics

DOI : 10.1371/journal.pone.0127612

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11 juillet 2015 · 17 h 01 min

Much Obliged: Analyzing the Importance and Impact of Acknowledgements in Scholarly Communication

« Author rights, peer review, open access, and the role of institutional repositories have all come under scrutiny by scholars, librarians, and legal experts in the last decade. Much of the conversation is centered on liberating information from the confinements of legal, financial, and hierarchical restraints. The relevancy of traditional citation analysis too, understood within the framework of an h-Index and Eigen factor, is under scrutiny with the rise of altmetrics. Collectively, these issues form the core of the scholarly communication process, from creation to dissemination to impact.

However, an overlooked facet of the scholarly communication process is the acknowledgement. As an expression of scholarly debt, the acknowledgment is an important facet of intellectual networks. Not only does the acknowledgement demonstrate the intellectual contributions of colleagues, advisors, funding agencies, and mentors but also the significance of librarians in the scholarly communication process. »

URL : http://eprints.rclis.org/25428/

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3 juillet 2015 · 17 h 50 min