Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications

Authors : Antonia Lock, Midori A Harris, Kim Rutherford, Jacqueline Hayles, Valerie Wood

Maximizing the impact and value of scientific research requires efficient knowledge distribution, which increasingly depends on the integration of standardized published data into online databases.

To make data integration more comprehensive and efficient for fission yeast research, PomBase has pioneered a community curation effort that engages publication authors directly in FAIR-sharing of data representing detailed biological knowledge from hypothesis-driven experiments.

Canto, an intuitive online curation tool that enables biologists to describe their detailed functional data using shared ontologies, forms the core of PomBase’s system.

With 8 years’ experience, and as the author response rate reaches 50%, we review community curation progress and the insights we have gained from the project.

We highlight incentives and nudges we deploy to maximize participation, and summarize project outcomes, which include increased knowledge integration and dissemination as well as the unanticipated added value arising from co-curation by publication authors and professional curators.

URL : Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications

DOI : https://doi.org/10.1093/database/baaa028

Towards Open Annotation: Examples and Experiments

Authors : Lindsey Seatter

This article interrogates how digital text annotation tools and projects facilitate online engagement and virtual communities of practice. With the rise of the Web 2.0 movement and the proliferation of digital resources, annotation has evolved from an isolated practice to a collaborative one.

This article unpacks the impact of this shift by providing an in-depth discussion of five web-based tools and two social reading projects.

This article examines issues of design, usability, and applicability to pedagogical intervention as well as underscores how productive group dynamics can be fostered through digital, social annotation.

URL : Towards Open Annotation: Examples and Experiments

DOI : http://doi.org/10.5334/kula.49