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Reproducible and reusable research: Are journal data sharing policies meeting the mark?

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Author : Nicole A Vasilevsky, Jessica Minnier, Melissa A Haendel, Robin E Champieux

Background

There is wide agreement in the biomedical research community that research data sharing is a primary ingredient for ensuring that science is more transparent and reproducible.

Publishers could play an important role in facilitating and enforcing data sharing; however, many journals have not yet implemented data sharing policies and the requirements vary widely across journals. This study set out to analyze the pervasiveness and quality of data sharing policies in the biomedical literature.

Methods

The online author’s instructions and editorial policies for 318 biomedical journals were manually reviewed to analyze the journal’s data sharing requirements and characteristics.

The data sharing policies were ranked using a rubric to determine if data sharing was required, recommended, required only for omics data, or not addressed at all. The data sharing method and licensing recommendations were examined, as well any mention of reproducibility or similar concepts.

The data was analyzed for patterns relating to publishing volume, Journal Impact Factor, and the publishing model (open access or subscription) of each journal.

Results

11.9% of journals analyzed explicitly stated that data sharing was required as a condition of publication. 9.1% of journals required data sharing, but did not state that it would affect publication decisions. 23.3% of journals had a statement encouraging authors to share their data but did not require it.

There was no mention of data sharing in 31.8% of journals. Impact factors were significantly higher for journals with the strongest data sharing policies compared to all other data sharing mark categories. Open access journals were not more likely to require data sharing than subscription journals.

Discussion

Our study confirmed earlier investigations which observed that only a minority of biomedical journals require data sharing, and a significant association between higher Impact Factors and journals with a data sharing requirement.

Moreover, while 65.7% of the journals in our study that required data sharing addressed the concept of reproducibility, as with earlier investigations, we found that most data sharing policies did not provide specific guidance on the practices that ensure data is maximally available and reusable.

URL : Reproducible and reusable research: Are journal data sharing policies meeting the mark?

DOI : https://peerj.com/articles/3208/

 

Copyright and the Use of Images as Biodiversity Data

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Authors : Willi Egloff, Donat Agosti, Puneet Kishor, David Patterson, Jeremy A. Miller

Taxonomy is the discipline responsible for charting the world’s organismic diversity, understanding ancestor/descendant relationships, and organizing all species according to a unified taxonomic classification system.

Taxonomists document the attributes (characters) of organisms, with emphasis on those can be used to distinguish species from each other. Character information is compiled in the scientific literature as text, tables, and images.

The information is presented according to conventions that vary among taxonomic domains; such conventions facilitate comparison among similar species, even when descriptions are published by different authors.

There is considerable uncertainty within the taxonomic community as to how to re-use images that were included in taxonomic publications, especially in regard to whether copyright applies.

This article deals with the principles and application of copyright law, database protection, and protection against unfair competition, as applied to images.

We conclude that copyright does not apply to most images in taxonomic literature because they are presented in a standardized way and lack the creativity that is required to qualify as ‘copyrightable works’.

There are exceptions, such as wildlife photographs, drawings and artwork produced in a distinctive individual form and intended for other than comparative purposes (such as visual art).

Further exceptions may apply to collections of images that qualify as a database in the sense of European database protection law. In a few European countries, there is legal protection for photographs that do not qualify as works in the usual sense of copyright.

It follows that most images found in taxonomic literature can be re-used for research or many other purposes without seeking permission, regardless of any copyright declaration. In observance of ethical and scholarly standards, re-users are expected to cite the author and original source of any image that they use.

URL : Copyright and the Use of Images as Biodiversity Data

DOI : http://dx.doi.org/10.1101/087015

Digital Theoria, Poiesis, and Praxis: Activating Humanities Research and Communication through Open Social Scholarship Platform Design

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Author : Jon Saklofske

Background

Scholarly communication has not experienced the kinds of digital enhancements enjoyed by researchers. The continuing domination of journals and monographs as primary venues of professional exchange and validation signifies lingering habits of critical perception, but also an opportunity to imagine and implement new collaborative publishing environments, models, and platforms.

Analysis

Examples of innovative projects bottlenecked by traditional reporting methods illustrate the need for such transformative practices.

Conclusion and implications

Developing flexible digital environments to establish open social scholarship as the default mode of critical inquiry and reporting is essential to the digital transformation of scholarly communication.

URL : Digital Theoria, Poiesis, and Praxis: Activating Humanities Research and Communication through Open Social Scholarship Platform Design

Alternative location : http://src-online.ca/index.php/src/article/view/252

Innovation and Market Discipline in Scholarly Publishing

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Author : Rowland Lorimer

Background

In the face of extensive, developed-world library endorsement of open access (OA) and not-for-profit publishing, large commercial journal publishers are, paradoxically, increasing market share by means of economies of scale brought about in part by ownership concentration.

Analysis

While the market success of commercial journal publishers may benefit from ownership concentration, it is argued that market-oriented innovation has also contributed to their market success.

A review of the very lively state of market-oriented innovation in journal publishing and usage metrics is undertaken and three innovation proposals derived from commercial magazines are introduced.

Conclusion and implications

The adoption of reader-focused features of commercial journals and the adaptation of the mobile-oriented strategy of commercial magazine publishers that respond to the modern digital information environment and mindset are recommended as strategically sound.

Partnering with low-cost promoting, OA-oriented libraries may hobble the ability of not-for-profit journals to maximize their value to researchers.

Originality/value

The weakness of OA as a constraining publishing strategy is brought forward and compared to readership building through innovation focused on usage.

URL : Innovation and Market Discipline in Scholarly Publishing

Alternative location : https://microblogging.infodocs.eu/wp-content/uploads/2016/11/246-2408-4-PB.pdf

Day of the week effect in paper submission/acceptance/rejection to/in/by peer review journals. II. An ARCH econometric-like modeling

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Authors : Marcel Ausloos, Olgica Nedic, Aleksandar Dekanski, Maciej J. Mrowinski, Piotr Fronczak, Agata Fronczak

This paper aims at providing a statistical model for the preferred behavior of authors submitting a paper to a scientific journal. The electronic submission of (about 600) papers to the Journal of the Serbian Chemical Society has been recorded for every day from Jan. 01, 2013 till Dec. 31, 2014, together with the acceptance or rejection paper fate.

Seasonal effects and editor roles (through desk rejection and subfield editors) are examined. An ARCH-like econometric model is derived stressing the main determinants of the favorite day-of-week process.

URL : https://arxiv.org/abs/1611.04639

Open Media Science

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Authors : Kristian Martiny, David Budtz Pedersen, Alfred Birkegaard

In this article, we present three challenges to the emerging Open Science (OS) movement: the challenge of communication, collaboration and cultivation of scientific research. We argue that to address these challenges OS needs to include other forms of data than what can be captured in a text and extend into a fully-fledged Open Media movement engaging with new media and non-traditional formats of science communication.

We discuss two cases where experiments with open media have driven new collaborations between scientists and documentarists. We use the cases to illustrate different advantages of using open media to face the challenges of OS.

URL : Open Media Science

Alternative location : https://jcom.sissa.it/archive/15/06/JCOM_1506_2016_A02

Towards an open science publishing platform

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Authors : Vitek Tracz, Rebecca Lawrence

The way science and research is done is rapidly becoming more open and collaborative. The traditional way of publishing new findings in journals is becoming increasingly outdated and no longer serves the needs of much of science.

Whilst preprints can bring significant benefits of removing delay and selection, they do not go far enough if simply implemented alongside the existing journal system. We propose that we need a new approach, an Open Science Platform, that takes the benefits of preprints but adds formal, invited, and transparent post-publication peer review.

This bypasses the problems of the current journal system and, in doing so, moves the evaluation of research and researchers away from the journal-based Impact Factor and towards a fairer system of article-based qualitative and quantitative indicators.

In the long term, it should be irrelevant where a researcher publishes their findings. What is important is that research is shared and made available without delay within a framework that encourages quality standards and requires all players in the research community to work as collaborators.

URL : Towards an open science publishing platform

DOI : https://dx.doi.org/10.12688%2Ff1000research.7968.1